Evidence map›Paper›PMID 33085133›Full record

ArticleProtein science : a publication of the Protein Society2020

Molecular and structural analysis of central transport channel in complex with Nup93 of nuclear pore complex.

Parshuram J Sonawane, Pravin S Dewangan, Pankaj Kumar Madheshiya, Kriti Chopra, Mohit Kumar, Sangeeta Niranjan, Mohammed Yousuf Ansari, Jyotsana Singh, Shrankhla Bawaria, Manidipa Banerjee and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.4field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 7 citations in OpenAlex.

  1. Advances in the understanding of nuclear pore complexes in human diseases.Journal of cancer research and clinical oncology · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Parshuram J SonawaneNational Center for Cell Science, Savitribai Phule University of Pune Campus, Pune, India.ORCID 0000-0001-7764-219X
Pravin S DewanganNational Center for Cell Science, Savitribai Phule University of Pune Campus, Pune, India.ORCID 0000-0002-4632-804X
Pankaj Kumar MadheshiyaNational Center for Cell Science, Savitribai Phule University of Pune Campus, Pune, India.ORCID 0000-0001-9708-3487
Kriti ChopraNational Center for Cell Science, Savitribai Phule University of Pune Campus, Pune, India.ORCID 0000-0002-9788-9218
Mohit KumarKusuma School of Biological Sciences, Indian Institute of Technology Delhi, New Delhi, India.ORCID 0000-0003-3147-3161
Sangeeta NiranjanNational Center for Cell Science, Savitribai Phule University of Pune Campus, Pune, India.
Mohammed Yousuf AnsariNational Center for Cell Science, Savitribai Phule University of Pune Campus, Pune, India.ORCID 0000-0001-7383-7029
Jyotsana SinghNational Center for Cell Science, Savitribai Phule University of Pune Campus, Pune, India.ORCID 0000-0001-6505-9781
Shrankhla BawariaNational Center for Cell Science, Savitribai Phule University of Pune Campus, Pune, India.ORCID 0000-0002-0785-3044
Manidipa BanerjeeKusuma School of Biological Sciences, Indian Institute of Technology Delhi, New Delhi, India.ORCID 0000-0001-6202-5965
Radha ChauhanNational Center for Cell Science, Savitribai Phule University of Pune Campus, Pune, India.ORCID 0000-0003-1632-1637
Savitribai Phule Pune University · INIndian Institute of Technology Delhi · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The central transport channel (CTC) of nuclear pore complexes (NPCs) is made up of three nucleoporins Nup62, Nup58 and Nup54. In which manner and capacity, these nucleoporins form the CTC, is not yet clear. We explored the CTC Nups from various species and observed that distinct biochemical characteristics of CTC Nups are evolutionarily conserved. Moreover, comparative biochemical analysis of CTC complexes showed various stoichiometric combinations of Nup62, Nup54 and Nup58 coexisting together. We observed the conserved amino-terminal domain of mammalian Nup93 is crucial for the anchorage of CTC and its localization to NPCs. We could reconstitute and purify mammalian CTC·Nup93 quaternary complex by co-expressing full length or N-terminal domain of Nup93 along with CTC complex. Further, we characterized CTC·Nup93 complex using small angle X-ray scattering and electron microscopy that revealed a "V" shape of CTC·Nup93 complex. Overall, this study demonstrated for the first time evolutionarily conserved plasticity and stoichiometric diversity in CTC Nups.

Indexed as

HumansMembrane GlycoproteinsMultiprotein ComplexesNuclear Pore Complex ProteinsProtein DomainsMembrane GlycoproteinsMultiprotein ComplexesNuclear Pore Complex Proteinsnuclear pore protein p62NUP54 protein, humanNup93 protein, humancentral transport channelco-immunoprecipitationnuclear pore complexNup93small angle X-ray scattering

Identifiers

PMID33085133
PMCPMC7679962
OpenAlexW3094410511

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.