Evidence map›Paper›PMID 33083753›Full record

ArticleiScience2020

Robust Filtering and Noise Suppression in Intragenic miRNA-Mediated Host Regulation.

Taek Kang, Tyler Quarton, Chance M Nowak, Kristina Ehrhardt, Abhyudai Singh, Yi Li, Leonidas Bleris

Open access · goldAbstract read
In one paragraph

Article in iScience, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.7field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Bioenergetic costs and the evolution of noise regulation by microRNAs.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  3. Article
  4. Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Taek KangBioengineering Department, University of Texas at Dallas, Richardson, TX 75080, USA.
Tyler QuartonBioengineering Department, University of Texas at Dallas, Richardson, TX 75080, USA.
Chance M NowakCenter for Systems Biology, University of Texas at Dallas, Richardson, TX 75080, USA.
Kristina EhrhardtBioengineering Department, University of Texas at Dallas, Richardson, TX 75080, USA.
Abhyudai SinghDepartment of Electrical Engineering, University of Delaware, Newark, DE 19716, USA.
Yi LiBioengineering Department, University of Texas at Dallas, Richardson, TX 75080, USA.
Leonidas BlerisBioengineering Department, University of Texas at Dallas, Richardson, TX 75080, USA.
The University of Texas at Dallas · USUniversity of Delaware · US

Funding

Consequences and Control of Randomness in Timing of Intracellular EventsR01GM124446 · NIGMS · UNIVERSITY OF DELAWARE · PI SINGH, ABHYUDAI · 2017 to 2020
$914k
NIGMS NIH HHS R01 GM124446
6 · The paper itself

Abstract

MicroRNAs (miRNAs) are short non-coding RNA molecules that regulate gene expression post-transcriptionally by binding to target messenger RNAs (mRNAs). Many human miRNAs are intragenic, located within introns of protein-coding sequence (host). Intriguingly, a percentage of intragenic miRNAs downregulate the host transcript forming an incoherent feedforward motif topology. Here, we study intragenic miRNA-mediated host gene regulation using a synthetic gene circuit stably integrated within a safe-harbor locus of human cells. When the intragenic miRNA is directed to inhibit the host transcript, we observe a reduction in reporter expression accompanied by output filtering and noise reduction. Specifically, the system operates as a filter with respect to promoter strength, with the threshold being robust to promoter strength and measurement time. Additionally, the intragenic miRNA regulation reduces expression noise compared to splicing-alone architecture. Our results provide a new insight into miRNA-mediated gene expression, with direct implications to gene therapy and synthetic biology applications.

Indexed as

Biological SciencesMolecular BiologyMolecular Mechanism of Gene Regulation

Identifiers

PMID33083753
PMCPMC7554026
OpenAlexW3089316836

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.