Evidence map›Paper›PMID 33083750›Full record

ArticleiScience2020

Automatic Classification of Cichlid Behaviors Using 3D Convolutional Residual Networks.

Lijiang Long, Zachary V Johnson, Junyu Li, Tucker J Lancaster, Vineeth Aljapur, Jeffrey T Streelman, Patrick T McGrath

Open access · goldAbstract read
In one paragraph

Article in iScience, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Lijiang LongSchool of Biological Sciences, Georgia Institute of Technology, Atlanta, GA 30332, USA.
Zachary V JohnsonSchool of Biological Sciences, Georgia Institute of Technology, Atlanta, GA 30332, USA.
Junyu LiSchool of Biological Sciences, Georgia Institute of Technology, Atlanta, GA 30332, USA.
Tucker J LancasterSchool of Biological Sciences, Georgia Institute of Technology, Atlanta, GA 30332, USA.
Vineeth AljapurSchool of Biological Sciences, Georgia Institute of Technology, Atlanta, GA 30332, USA.
Jeffrey T StreelmanSchool of Biological Sciences, Georgia Institute of Technology, Atlanta, GA 30332, USA.
Patrick T McGrathSchool of Biological Sciences, Georgia Institute of Technology, Atlanta, GA 30332, USA.
Georgia Institute of Technology · US

Funding

Mechanistic understanding of age-dependent genetic architectureR01GM114170 · NIGMS · GEORGIA INSTITUTE OF TECHNOLOGY · PI MCGRATH, PATRICK T · 2015 to 2019
$1.5M
Castles made of sand: The genomics of complex behaviorR01GM101095 · NIGMS · GEORGIA INSTITUTE OF TECHNOLOGY · PI FRASER, HUNTER B, STREELMAN, JEFFERY TODD · 2014 to 2017
$1.2M
Neural substrates of bower building behavior in Lake Malawi cichlid fishF32GM128346 · NIGMS · GEORGIA INSTITUTE OF TECHNOLOGY · PI JOHNSON, ZACHARY V · 2019 to 2020
$73k
NIGMS NIH HHS F32 GM128346NIGMS NIH HHS R01 GM101095NIGMS NIH HHS R01 GM114170
6 · The paper itself

Abstract

Many behaviors that are critical for survival and reproduction are expressed over extended time periods. The ability to inexpensively record and store large volumes of video data creates new opportunities to understand the biological basis of these behaviors and simultaneously creates a need for tools that can automatically quantify behaviors from large video datasets. Here, we demonstrate that 3D Residual Networks can be used to classify an array of complex behaviors in Lake Malawi cichlid fishes. We first apply pixel-based hidden Markov modeling combined with density-based spatiotemporal clustering to identify sand disturbance events. After this, a 3D ResNet, trained on 11,000 manually annotated video clips, accurately (>76%) classifies the sand disturbance events into 10 fish behavior categories, distinguishing between spitting, scooping, fin swipes, and spawning. Furthermore, animal intent can be determined from these clips, as spits and scoops performed during bower construction are classified independently from those during feeding.

Indexed as

Artificial IntelligenceComputer SciencePiscine BehaviorZoology

Identifiers

PMID33083750
PMCPMC7553349
OpenAlexW3087746906

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.