Evidence map›Paper›PMID 33082940›Full record

ArticleLight, science & applications2020

Miniscope3D: optimized single-shot miniature 3D fluorescence microscopy.

Kyrollos Yanny, Nick Antipa, William Liberti, Sam Dehaeck, Kristina Monakhova, Fanglin Linda Liu, Konlin Shen, Ren Ng, Laura Waller

Erratum issuedAbstract read
In one paragraph

Article in Light, science & applications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Chromatix: a differentiable, GPU-accelerated wave-optics library.bioRxiv : the preprint server for biology · 2026
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. PS$^{2}$2 F: Polarized Spiral Point Spread Function for Single-Shot 3D Sensing.IEEE transactions on pattern analysis and machine intelligence · 2025
    Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Review
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Kyrollos Yanny *UCB/UCSF Joint Graduate Program in Bioengineering, University of California, Berkeley, CA 94720 USA.ORCID 0000-0003-4623-8172
Nick Antipa *Department of Electrical Engineering & Computer Sciences, University of California, Berkeley, CA 94720 USA.
William LibertiDepartment of Electrical Engineering & Computer Sciences, University of California, Berkeley, CA 94720 USA.
Sam DehaeckTIPs Department, Université libre de Bruxelles (ULB), 1050 Brussels, Belgium.
Kristina MonakhovaDepartment of Electrical Engineering & Computer Sciences, University of California, Berkeley, CA 94720 USA.
Fanglin Linda LiuDepartment of Electrical Engineering & Computer Sciences, University of California, Berkeley, CA 94720 USA.ORCID 0000-0003-4498-5668
Konlin ShenDepartment of Electrical Engineering & Computer Sciences, University of California, Berkeley, CA 94720 USA.ORCID 0000-0003-1184-7605
Ren NgDepartment of Electrical Engineering & Computer Sciences, University of California, Berkeley, CA 94720 USA.
Laura WallerUCB/UCSF Joint Graduate Program in Bioengineering, University of California, Berkeley, CA 94720 USA.ORCID 0000-0003-1243-2356

Funding

Compressive Light Field microscopy for optogenetic neural activity trackingR21EY027597 · NEI · UNIVERSITY OF CALIFORNIA BERKELEY · PI WALLER, LAURA · 2016 to 2017
$448k
NEI NIH HHS R21 EY027597
6 · The paper itself

Abstract

Miniature fluorescence microscopes are a standard tool in systems biology. However, widefield miniature microscopes capture only 2D information, and modifications that enable 3D capabilities increase the size and weight and have poor resolution outside a narrow depth range. Here, we achieve the 3D capability by replacing the tube lens of a conventional 2D Miniscope with an optimized multifocal phase mask at the objective's aperture stop. Placing the phase mask at the aperture stop significantly reduces the size of the device, and varying the focal lengths enables a uniform resolution across a wide depth range. The phase mask encodes the 3D fluorescence intensity into a single 2D measurement, and the 3D volume is recovered by solving a sparsity-constrained inverse problem. We provide methods for designing and fabricating the phase mask and an efficient forward model that accounts for the field-varying aberrations in miniature objectives. We demonstrate a prototype that is 17 mm tall and weighs 2.5 grams, achieving 2.76 μm lateral, and 15 μm axial resolution across most of the 900 × 700 × 390 μm

Indexed as

Imaging and sensingMicroscopy

Identifiers

PMID33082940
PMCPMC7532148

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.