Evidence map›Paper›PMID 33082842›Full record

ArticleComputational and mathematical methods in medicine2020

Transcriptome Analysis Identifies Novel Prognostic Genes in Osteosarcoma.

Junfeng Chen, Xiaojun Guo, Guangjun Zeng, Jianhua Liu, Bin Zhao

Open access · hybridAbstract readValidation Study
In one paragraph

Article in Computational and mathematical methods in medicine, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.4field-weighted citation impact, top 46% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Junfeng ChenDepartment of Orthopedics, Tianmen First People's Hospital, Tianmen, Hubei 431700, China.
Xiaojun GuoDepartment of Orthopedics, Tianmen First People's Hospital, Tianmen, Hubei 431700, China.
Guangjun ZengDepartment of Orthopedics, Tianmen First People's Hospital, Tianmen, Hubei 431700, China.
Jianhua LiuDepartment of Orthopedics, Tianmen First People's Hospital, Tianmen, Hubei 431700, China.
Bin ZhaoDepartment of Foot and Ankle Surgery, Wuhan Fourth Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, Hubei, China.ORCID https://orcid.org/0000-0001-5133-7365
The First People's Hospital of Tianmen · CNWuhan Puai Hospital · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Osteosarcoma (OS), a malignant primary bone tumor often seen in young adults, is highly aggressive. The improvements in high-throughput technologies have accelerated the identification of various prognostic biomarkers for cancer survival prediction. However, only few studies focus on the prediction of prognosis in OS patients using gene expression data due to small sample size and the lack of public datasets. In the present study, the RNA-seq data of 82 OS samples, along with their clinical information, were collected from the TARGET database. To identify the prognostic genes for the OS survival prediction, we selected the top 50 genes of contribution as the initial candidate genes of the prognostic risk model, which were ranked by random forest model, and found that the prognostic model with five predictors including

Indexed as

Antigens, CDAxonemal DyneinsBiomarkers, TumorBone NeoplasmsComputational BiologyDNA-Binding ProteinsGene Expression ProfilingGene Expression Regulation, NeoplasticGenes, mycHumansKaplan-Meier EstimateMathematical ConceptsMultivariate AnalysisOsteosarcomaPrognosisProportional Hazards ModelsAntigens, CDAxonemal DyneinsBiomarkers, TumorCD180 protein, humanDNA-Binding ProteinsDNAI1 protein, humanFATE1 protein, humanTranscription Factors

Identifiers

PMID33082842
PMCPMC7559853
OpenAlexW3092294391

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.