Evidence map›Paper›PMID 33082320›Full record

ArticleScientific data2020

Draft genome of Bugula neritina, a colonial animal packing powerful symbionts and potential medicines.

Mikhail Rayko, Aleksey Komissarov, Jason C Kwan, Grace Lim-Fong, Adelaide C Rhodes, Sergey Kliver, Polina Kuchur, Stephen J O'Brien, Jose V Lopez

Open access · goldAbstract readDataset
In one paragraph

Article in Scientific data, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.7field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. The genome sequence of the ruby bryozoan,Wellcome open research · 2024
    Article
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 2 countries.

Mikhail RaykoCenter for Algorithmic Biotechnology, Institute of Translational Biomedicine, St. Petersburg State University, St. Petersburg, 199034, Russia.ORCID 0000-0002-3737-1521
Aleksey KomissarovApplied Genomics Laboratory, SCAMT Institute, ITMO University, Saint Petersburg, 197101, Russia.
Jason C KwanDivision of Pharmaceutical Sciences, School of Pharmacy, University of Wisconsin-Madison, Madison, WI, 53706, USA.ORCID 0000-0001-9933-1536
Grace Lim-FongDepartment of Biology, Randolph-Macon College, Ashland, VA, 23005, USA.ORCID 0000-0002-8442-8295
Adelaide C RhodesZoologistics Consulting, Salem, MA, 01970, USA.
Sergey KliverApplied Genomics Laboratory, SCAMT Institute, ITMO University, Saint Petersburg, 197101, Russia.
Polina KuchurApplied Genomics Laboratory, SCAMT Institute, ITMO University, Saint Petersburg, 197101, Russia.
Stephen J O'BrienGenomic Diversity Laboratory, ITMO University, Saint Petersburg, 197101, Russia.
Jose V LopezHalmos College of Arts and Sciences, Nova Southeastern University, Ft Lauderdale, FL, 33314, USA. joslo@nova.edu.
ITMO University · RUNova Southeastern University · USRandolph–Macon College · USSt Petersburg University · RUUniversity of Wisconsin–Madison · US

Funding

Russian Foundation for Basic Research (RFBR) 17-00-00144Saint Petersburg State University (St. Petersburg State University) PURE 51555639
6 · The paper itself

Abstract

Many animal phyla have no representatives within the catalog of whole metazoan genome sequences. This dataset fills in one gap in the genome knowledge of animal phyla with a draft genome of Bugula neritina (phylum Bryozoa). Interest in this species spans ecology and biomedical sciences because B. neritina is the natural source of bioactive compounds called bryostatins. Here we present a draft assembly of the B. neritina genome obtained from PacBio and Illumina HiSeq data, as well as genes and proteins predicted de novo and verified using transcriptome data, along with the functional annotation. These sequences will permit a better understanding of host-symbiont interactions at the genomic level, and also contribute additional phylogenomic markers to evaluate Lophophorate or Lophotrochozoa phylogenetic relationships. The effort also fits well with plans to ultimately sequence all orders of the Metazoa.

Indexed as

GenomeAnimalsBryostatinsBryozoaPhylogenySymbiosisBryostatins

Identifiers

PMID33082320
PMCPMC7576161
OpenAlexW3094047375

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.