Evidence map›Paper›PMID 33080509›Full record

ArticleMedical image analysis2021

Selective synthetic augmentation with HistoGAN for improved histopathology image classification.

Yuan Xue, Jiarong Ye, Qianying Zhou, L Rodney Long, Sameer Antani, Zhiyun Xue, Carl Cornwell, Richard Zaino, Keith C Cheng, Xiaolei Huang

Abstract read
In one paragraph

Article in Medical image analysis, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

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  4. bioRxiv : the preprint server for biology · 2025
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  15. SIAN: STYLE-GUIDED INSTANCE-ADAPTIVE NORMALIZATION FOR MULTI-ORGAN HISTOPATHOLOGY IMAGE SYNTHESIS.Proceedings. IEEE International Symposium on Biomedical Imaging · 2023
    Article
  16. Article
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  18. Medical Specialty Classification Based on Semiadversarial Data Augmentation.Computational intelligence and neuroscience · 2023
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Yuan XueCollege of Information Sciences and Technology, The Pennsylvania State University, University Park, PA 16802, USA.
Jiarong YeCollege of Information Sciences and Technology, The Pennsylvania State University, University Park, PA 16802, USA.
Qianying ZhouCollege of Information Sciences and Technology, The Pennsylvania State University, University Park, PA 16802, USA.
L Rodney LongLister Hill National Center for Biomedical Communications, National Library of Medicine, Bethesda, MD 20892, USA.
Sameer AntaniLister Hill National Center for Biomedical Communications, National Library of Medicine, Bethesda, MD 20892, USA.
Zhiyun XueLister Hill National Center for Biomedical Communications, National Library of Medicine, Bethesda, MD 20892, USA.
Carl CornwellLister Hill National Center for Biomedical Communications, National Library of Medicine, Bethesda, MD 20892, USA.
Richard ZainoDepartment of Pathology, Penn State Health Milton S. Hershey Medical Center and Penn State College Of Medicine, Hershey, PA 17033, USA.
Keith C ChengDepartment of Pathology, Penn State Health Milton S. Hershey Medical Center and Penn State College Of Medicine, Hershey, PA 17033, USA.
Xiaolei HuangCollege of Information Sciences and Technology, The Pennsylvania State University, University Park, PA 16802, USA. Electronic address: sharon.x.huang@psu.edu.

Funding

Machine learning and artificial intelligence research for clinical medical image processingZIALM010018 · NLM · NATIONAL LIBRARY OF MEDICINE · PI ANTANI, SAMEER · 2021 to 2025
$9.0M
Groundwork for a Synchrotron MicroCT Imaging Resource for Biology (SMIRB)R24OD018559 · OD · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI CHENG, KEITH CHI · 2015 to 2022
$6.4M
NIH HHS R24 OD018559
6 · The paper itself

Abstract

Histopathological analysis is the present gold standard for precancerous lesion diagnosis. The goal of automated histopathological classification from digital images requires supervised training, which requires a large number of expert annotations that can be expensive and time-consuming to collect. Meanwhile, accurate classification of image patches cropped from whole-slide images is essential for standard sliding window based histopathology slide classification methods. To mitigate these issues, we propose a carefully designed conditional GAN model, namely HistoGAN, for synthesizing realistic histopathology image patches conditioned on class labels. We also investigate a novel synthetic augmentation framework that selectively adds new synthetic image patches generated by our proposed HistoGAN, rather than expanding directly the training set with synthetic images. By selecting synthetic images based on the confidence of their assigned labels and their feature similarity to real labeled images, our framework provides quality assurance to synthetic augmentation. Our models are evaluated on two datasets: a cervical histopathology image dataset with limited annotations, and another dataset of lymph node histopathology images with metastatic cancer. Here, we show that leveraging HistoGAN generated images with selective augmentation results in significant and consistent improvements of classification performance (6.7% and 2.8% higher accuracy, respectively) for cervical histopathology and metastatic cancer datasets.

Indexed as

NeoplasmsHumansHistopathology image classificationMedical image synthesisSynthetic data augmentation

Identifiers

PMID33080509
PMCPMC8647936

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.