Evidence map›Paper›PMID 33079209›Full record

ReviewCurrent genetics2021

Dynamic regulation of Pif1 acetylation is crucial to the maintenance of genome stability.

Onyekachi E Ononye, Christopher W Sausen, Matthew L Bochman, Lata Balakrishnan

Open access · greenAbstract readReview
In one paragraph

Review in Current genetics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.5field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Role and Regulation of Pif1 Family Helicases at the Replication Fork.International journal of molecular sciences · 2022
    Review
  5. Article
  6. Article
  7. Overcoming stochastic variations in culture variables to quantify and compare growth curve data.BioEssays : news and reviews in molecular, cellular and developmental biology · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Onyekachi E OnonyeDepartment of Biology, School of Science, Indiana University Purdue University Indianapolis, Indianapolis, USA.
Christopher W SausenMolecular and Cellular Biochemistry Department, Indiana University, Bloomington, USA.
Matthew L BochmanMolecular and Cellular Biochemistry Department, Indiana University, Bloomington, USA. bochman@indiana.edu.ORCID http://orcid.org/0000-0002-2807-0452
Lata BalakrishnanDepartment of Biology, School of Science, Indiana University Purdue University Indianapolis, Indianapolis, USA. latabala@iupui.edu.ORCID http://orcid.org/0000-0003-0285-9559
Indiana University Bloomington · USUniversity of Indianapolis · US

Funding

DNA helicases and associated factors in genome stabilityR35GM133437 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI BOCHMAN, MATTHEW LINNE · 2019 to 2023
$2.4M
American Cancer Society RSG-16-180-01-DMCNational Science Foundation 1929346NIGMS NIH HHS R35 GM133437NIH HHS 1R35GM133437
6 · The paper itself

Abstract

PIF1 family helicases are evolutionarily conserved among prokaryotes and eukaryotes. These enzymes function to support genome integrity by participating in multiple DNA transactions that can be broadly grouped into DNA replication, DNA repair, and telomere maintenance roles. However, the levels of PIF1 activity in cells must be carefully controlled, as Pif1 over-expression in Saccharomyces cerevisiae is toxic, and knockdown or over-expression of human PIF1 (hPIF1) supports cancer cell growth. This suggests that PIF1 family helicases must be subject to tight regulation in vivo to direct their activities to where and when they are needed, as well as to maintain those activities at proper homeostatic levels. Previous work shows that C-terminal phosphorylation of S. cerevisiae Pif1 regulates its telomere maintenance activity, and we recently identified that Pif1 is also regulated by lysine acetylation. The over-expression toxicity of Pif1 was exacerbated in cells lacking the Rpd3 lysine deacetylase, but mutation of the NuA4 lysine acetyltransferase subunit Esa1 ameliorated this toxicity. Using recombinant proteins, we found that acetylation stimulated the DNA binding affinity, ATPase activity, and DNA unwinding activities of Pif1. All three domains of the helicase were targets of acetylation in vitro, and multiple lines of evidence suggest that acetylation drives a conformational change in the N-terminal domain of Pif1 that impacts this stimulation. It is currently unclear what triggers lysine acetylation of Pif1 and how this modification impacts the many in vivo functions of the helicase, but future work promises to shed light on how this protein is tightly regulated within the cell.

Indexed as

AcetylationDNA HelicasesDNA RepairDNA ReplicationGene Expression Regulation, FungalGenomic InstabilityHistone AcetyltransferasesHistone DeacetylasesHumansNeoplasmsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTelomereTelomere HomeostasisDNA HelicasesEsa1 protein, S cerevisiaeHistone AcetyltransferasesHistone DeacetylasesNuA4 protein, S cerevisiaePIF1 protein, humanPIF1 protein, S cerevisiaeRPD3 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsDNA repairDNA replicationG4 resolvaseLysine acetylationNuA4 (Esa1)Pif1 helicaseRpd3

Identifiers

PMID33079209
PMCPMC7887038
OpenAlexW3093004143

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.