Evidence map›Paper›PMID 33078460›Full record

ArticleProtein science : a publication of the Protein Society2020

Crystal structure of the giant panda MHC class I complex: First insights into the viral peptide presentation profile in the bear family.

Hongyu Yuan, Lizhen Ma, Lijie Zhang, Xiaoying Li, Chun Xia

Open access · bronzeAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.2field-weighted citation impact, top 46% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Hongyu YuanDepartment of Microbiology and Immunology, College of Veterinary Medicine, China Agricultural University, Beijing, China.
Lizhen MaDepartment of Microbiology and Immunology, College of Veterinary Medicine, China Agricultural University, Beijing, China.
Lijie ZhangDepartment of Microbiology and Immunology, College of Veterinary Medicine, China Agricultural University, Beijing, China.
Xiaoying LiDepartment of Microbiology and Immunology, College of Veterinary Medicine, China Agricultural University, Beijing, China.
Chun XiaDepartment of Microbiology and Immunology, College of Veterinary Medicine, China Agricultural University, Beijing, China.ORCID 0000-0002-3444-0624
China Agricultural University · CNAcademy of Military Medical Sciences · CNHenan Agricultural University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The viral cytotoxic T lymphocyte (CTL) epitope peptides presented by classical MHC-I molecules require the assembly of a peptide-MHC-I-β2m (pMHC-I) trimolecular complex for T cell receptor (TCR) recognition, which is the critical activation link for triggering antiviral T cell immunity. Research on T cell immunology in the Ursidae family, especially structural immunology, is still lacking. In this study, the structure of the key trimolecular complex pMHC-I, which binds a peptide from canine distemper virus, was solved for the first time using giant panda as a representative species of Ursidae. The structural characteristics of the giant panda pMHC-I complex (pAime-128), including the unique pockets in the peptide-binding groove (PBG), were analyzed in detail. Comparing the pAime-128 to others in the bear family and extending the comparison to other mammals revealed distinct features. The interaction between MHC-I and β2m, the features of pAime-128 involved in TCR docking and cluster of differentiation 8 (CD8) binding, the anchor sites in the PBG, and the CTL epitopes of potential viruses that infect pandas were clarified. Unique features of pMHC-I viral antigen presentation in the panda were revealed by solving the three-dimensional (3D) structure of pAime-128. The distinct characteristics of pAime-128 indicate an unusual event that emerged during the evolution of the MHC system in the bear family. These results provide a new platform for research on panda CTL immunity and the design of vaccines for application in the bear family.

Indexed as

Antigen PresentationUrsidaeAnimalsDistemper Virus, CanineEpitopesHistocompatibility Antigens Class IPeptidesViral ProteinsEpitopesHistocompatibility Antigens Class IPeptidesViral Proteinscrystal structureevolutiongiant pandaMHC-Ipeptide presentation

Identifiers

PMID33078460
PMCPMC7679963
OpenAlexW3092942622

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.