Evidence map›Paper›PMID 33077894›Full record

ArticleGenetics in medicine : official journal of the American College of Medical Genetics2021

JARID2 haploinsufficiency is associated with a clinically distinct neurodevelopmental syndrome.

Eline A Verberne, Shuxiang Goh, Jade England, Manon van Ginkel, Louise Rafael-Croes, Saskia Maas, Abeltje Polstra, Yuri A Zarate, Katherine A Bosanko, Kieran B Pechter and 30 more

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In one paragraph

Article in Genetics in medicine : official journal of the American College of Medical Genetics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 1 pooled it
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 1 synthesis or guideline pooled it, 35 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Neurod2 knockdown inmicroPublication biology · 2026
    Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Functional Insight into and Refinement of the Genomic Boundaries of theInternational journal of molecular sciences · 2023
    Article
  12. Article
  13. Review
  14. Article
  15. DNA Methylation Signature forInternational journal of molecular sciences · 2022
    Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

40 authors at 20 institutions in 8 countries.

Eline A Verberne *Department of Clin Genet, Amsterdam UMC, Amsterdam Reproduction and Development Research Institute, University of Amsterdam, Amsterdam, The Netherlands.ORCID http://orcid.org/0000-0003-2327-1666
Shuxiang Goh *Department of Clin Genet, Liverpool Hospital, Sydney, Australia.
Jade England *Department of Pediatrics, University of Montreal, Montreal, QC, Canada.
Manon van GinkelDepartment of Clin Genet, Amsterdam UMC, Amsterdam Reproduction and Development Research Institute, University of Amsterdam, Amsterdam, The Netherlands.
Louise Rafael-CroesDepartment of Pediatrics, Dr. Horacio E. Oduber Hospital, Oranjestad, Aruba.
Saskia MaasDepartment of Clin Genet, Amsterdam UMC, Amsterdam Reproduction and Development Research Institute, University of Amsterdam, Amsterdam, The Netherlands.
Abeltje PolstraDepartment of Clin Genet, Amsterdam UMC, Amsterdam Reproduction and Development Research Institute, University of Amsterdam, Amsterdam, The Netherlands.
Yuri A ZarateSection of Genetics and Metabolism, Department of Pediatrics, University of Arkansas for Medical Sciences, Little Rock, AR, USA.
Katherine A BosankoSection of Genetics and Metabolism, Department of Pediatrics, University of Arkansas for Medical Sciences, Little Rock, AR, USA.
Kieran B PechterDivision of Genomic Diagnostics, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Emma BedoukianRoberts Individualized Medical Genetics Center and the Division of Hum Genet, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Kosuke IzumiRoberts Individualized Medical Genetics Center and the Division of Hum Genet, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Ayeshah ChaudhryDepartment of Laboratory Medicine and Genetics, Trillium Health Partners, Mississauga, ON, Canada.
Nathaniel H RobinDepartment of Genetics, University of Alabama at Birmingham (UAB), Birmingham, AL, USA.
Megan BootheDepartment of Genetics, University of Alabama at Birmingham (UAB), Birmingham, AL, USA.
Natalie C LippaInstitute for Genomic Medicine, Columbia University Irving Medical Center, New York, NY, USA.
Vimla AggarwalInstitute for Genomic Medicine, Columbia University Irving Medical Center, New York, NY, USA.
Darryl C De VivoDepartments of Neurology and Pediatrics, Columbia University Irving Medical Center, New York, NY, USA.
Anna LehmanDepartment of Medical Genetics, Faculty of Medicine, University of British Columbia, Vancouver, BC, Canada.
Causes StudyDepartment of Medical Genetics, Faculty of Medicine, University of British Columbia, Vancouver, BC, Canada.
Sylvia StocklerDepartment of Pediatrics, Faculty of Medicine, University of British Columbia, Vancouver, BC, Canada.
Ange-Line BruelÉquipe Génétique des Anomalies du Développement (GAD), CHU Dijon-Bourgogne, Dijon, France.
Bertrand IsidorService de génétique médicale, CHU de Nantes, Nantes, France.
Jennifer LemonsDepartment of Pediatrics, UTHealth McGovern Medical School, Houston, TX, USA.
David F Rodriguez-BuriticaDepartment of Pediatrics, UTHealth McGovern Medical School, Houston, TX, USA.
Christopher M RichmondVictorian Clin Genet Services, Murdoch Children's Research Institute, Melbourne, VIC, Australia.
Zornitza StarkVictorian Clin Genet Services, Murdoch Children's Research Institute, Melbourne, VIC, Australia.
Pankaj B AgrawalDivisions of Newborn Medicine and Genetics & Genomics, Department of Pediatrics, Manton Center for Orphan Disease Research, Boston Children's Hospital, Boston, MA, USA.
R Frank KooyDepartment of Medical Genetics, University of Antwerp, Antwerp, Belgium.
Marije E C MeuwissenDepartment of Medical Genetics, University of Antwerp, Antwerp, Belgium.
David A KoolenDepartment of Hum Genet, Radboud Institute for Molecular Life Sciences and Donders Institute for Brain, Cognition and Behaviour, Radboud university medical center, Nijmegen, The Netherlands.
Rolf PfundtDepartment of Hum Genet, Radboud Institute for Molecular Life Sciences and Donders Institute for Brain, Cognition and Behaviour, Radboud university medical center, Nijmegen, The Netherlands.
Agne LiedenDepartment of Clin Genet, Karolinska University Hospital, Stockholm, Sweden.
Britt-Marie AnderlidDepartment of Clin Genet, Karolinska University Hospital, Stockholm, Sweden.
Dagmar GlatzDépartement de Médecine, Faculté de médecine, Université de Montréal, and Centre de Recherche de l'Hôpital Maisonneuve-Rosemont, Montreal, QC, Canada.
Marcel M A M MannensDepartment of Clin Genet, Amsterdam UMC, Amsterdam Reproduction and Development Research Institute, University of Amsterdam, Amsterdam, The Netherlands.
Madhura BakshiDepartment of Clin Genet, Liverpool Hospital, Sydney, Australia.
Frédérick A MalletteDépartement de Médecine, Faculté de médecine, Université de Montréal, and Centre de Recherche de l'Hôpital Maisonneuve-Rosemont, Montreal, QC, Canada.
Mieke M van Haelst *Department of Clin Genet, Amsterdam UMC, Amsterdam Reproduction and Development Research Institute, University of Amsterdam, Amsterdam, The Netherlands. m.vanhaelst@amsterdamumc.nl.
Philippe M Campeau *Department of Pediatrics, University of Montreal, Montreal, QC, Canada. p.campeau@umontreal.ca.
Amsterdam University Medical Centers · NLChildren's Hospital of Philadelphia · USUniversity of British Columbia · CAColumbia University · USHôpital Maisonneuve-Rosemont · CAKarolinska University Hospital · SELiverpool Hospital · AURadboud University Nijmegen · NLThe University of Texas Health Science Center at Houston · USUniversité de Montréal · CAUniversity of Alabama at Birmingham · USUniversity of Antwerp · BEUniversity of Arkansas for Medical Sciences · USUniversity of Aruba · AWBoston Children's Hospital · USCentre Hospitalier Universitaire de Nantes · FRColumbia University Irving Medical Center · USGriffith University · AUThe University of Melbourne · AUUniversity of Toronto · CA

Funding

CIHR
6 · The paper itself

Abstract

purposeJARID2, located on chromosome 6p22.3, is a regulator of histone methyltransferase complexes that is expressed in human neurons. So far, 13 individuals sharing clinical features including intellectual disability (ID) were reported with de novo heterozygous deletions in 6p22-p24 encompassing the full length JARID2 gene (OMIM 601594). However, all published individuals to date have a deletion of at least one other adjoining gene, making it difficult to determine if JARID2 is the critical gene responsible for the shared features. We aim to confirm JARID2 as a human disease gene and further elucidate the associated clinical phenotype.

methodsChromosome microarray analysis, exome sequencing, and an online matching platform (GeneMatcher) were used to identify individuals with single-nucleotide variants or deletions involving JARID2.

resultsWe report 16 individuals in 15 families with a deletion or single-nucleotide variant in JARID2. Several of these variants are likely to result in haploinsufficiency due to nonsense-mediated messenger RNA (mRNA) decay. All individuals have developmental delay and/or ID and share some overlapping clinical characteristics such as facial features with those who have larger deletions involving JARID2.

conclusionWe report that JARID2 haploinsufficiency leads to a clinically distinct neurodevelopmental syndrome, thus establishing gene-disease validity for the purpose of diagnostic reporting.

Indexed as

Intellectual DisabilityNeurodevelopmental DisordersExome SequencingHaploinsufficiencyHeterozygoteHumansPhenotypePolycomb Repressive Complex 2SyndromeJARID2 protein, humanPolycomb Repressive Complex 2developmental delayintellectual disabilityJARID2neurodevelopment

Identifiers

PMID33077894
OpenAlexW3092820651

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.