Evidence map›Paper›PMID 33077516›Full record

ArticleThe Journal of biological chemistry2020

Quantitative phosphoproteomic analysis reveals involvement of PD-1 in multiple T cell functions.

Anna S Tocheva, Michael Peled, Marianne Strazza, Kieran R Adam, Shalom Lerrer, Shruti Nayak, Inbar Azoulay-Alfaguter, Connor J R Foster, Elliot A Philips, Benjamin G Neel and 2 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.3field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
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  12. A comprehensive review of SHP2 and its role in cancer.Cellular oncology (Dordrecht, Netherlands) · 2022
    Review
  13. Immune Checkpoint Receptors Signaling in T Cells.International journal of molecular sciences · 2022
    Review
  14. Review
  15. Article
  16. Review
  17. Article
  18. The PD-1 Interactome.Advanced biology · 2021
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 2 countries.

Anna S TochevaColumbia Center for Translational Immunology, Columbia University Medical Center, New York, USA; Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, New York, USA. Electronic address: anna.tocheva@mssm.edu.
Michael PeledPerlmutter Cancer Center, NYU School of Medicine, New York, New York, USA; The Institute of Pulmonary Medicine, the Chaim Sheba Medical Center, Ramat Gan, Israel.
Marianne StrazzaColumbia Center for Translational Immunology, Columbia University Medical Center, New York, USA; Division of Rheumatology, Columbia University Medical Center, New York, New York, USA.
Kieran R AdamColumbia Center for Translational Immunology, Columbia University Medical Center, New York, USA; Division of Rheumatology, Columbia University Medical Center, New York, New York, USA.
Shalom LerrerColumbia Center for Translational Immunology, Columbia University Medical Center, New York, USA; Division of Rheumatology, Columbia University Medical Center, New York, New York, USA.
Shruti NayakProteomics Laboratory, NYU School of Medicine, New York, New York, USA.
Inbar Azoulay-AlfaguterPerlmutter Cancer Center, NYU School of Medicine, New York, New York, USA.
Connor J R FosterPerlmutter Cancer Center, NYU School of Medicine, New York, New York, USA.
Elliot A PhilipsDepartment of Biochemistry and Molecular Pharmacology, NYU School of Medicine, New York, New York, USA.
Benjamin G NeelPerlmutter Cancer Center, NYU School of Medicine, New York, New York, USA.
Beatrix UeberheideProteomics Laboratory, NYU School of Medicine, New York, New York, USA.
Adam MorColumbia Center for Translational Immunology, Columbia University Medical Center, New York, USA; Division of Rheumatology, Columbia University Medical Center, New York, New York, USA. Electronic address: am5121@cumc.columbia.edu.
Columbia University Irving Medical Center · USNYU Langone’s Laura and Isaac Perlmutter Cancer CenterNew York University · USSheba Medical Center · IL

Funding

Novel mechanisms regulating PD-1 signaling and functionR01AI125640 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI Adam Mor · 2016 to 2026
$4.3M
PAG is a novel target in immunotherapyR01AI150597 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI MOR, ADAM · 2020 to 2024
$2.7M
(PQ8) Predictive biomarkers for the onset of immune-related adverse events associated with PD-1 blockadeR21CA231277 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI MOR, ADAM · 2019 to 2020
$361k
NCI NIH HHS R21 CA231277NIAID NIH HHS R01 AI125640NIAID NIH HHS R01 AI150597
6 · The paper itself

Abstract

Programmed cell death protein 1 (PD-1) is a critical inhibitory receptor that limits excessive T cell responses. Cancer cells have evolved to evade these immunoregulatory mechanisms by upregulating PD-1 ligands and preventing T cell-mediated anti-tumor responses. Consequently, therapeutic blockade of PD-1 enhances T cell-mediated anti-tumor immunity, but many patients do not respond and a significant proportion develop inflammatory toxicities. To improve anti-cancer therapy, it is critical to reveal the mechanisms by which PD-1 regulates T cell responses. We performed global quantitative phosphoproteomic interrogation of PD-1 signaling in T cells. By complementing our analysis with functional validation assays, we show that PD-1 targets tyrosine phosphosites that mediate proximal T cell receptor signaling, cytoskeletal organization, and immune synapse formation. PD-1 ligation also led to differential phosphorylation of serine and threonine sites within proteins regulating T cell activation, gene expression, and protein translation.

Indexed as

Cell AdhesionCytokinesHumansImmunity, CellularLigandsLymphocyte ActivationPhosphoproteinsPhosphorylationProgrammed Cell Death 1 ReceptorProteomeReceptors, Antigen, T-CellSignal TransductionT-LymphocytesTranscriptional ActivationCytokinesLigandsPDCD1 protein, humanPhosphoproteinsProgrammed Cell Death 1 ReceptorProteomeReceptors, Antigen, T-Cellcell signalingimmunologyimmunotherapyinhibition mechanismkinase-substrate relationshipsmass spectrometryphosphoproteomicsprogrammed cell death ligand 2 (PD-L2)programmed cell death protein 1 (PD-1)signaling networksT cellT cell receptor (TCR)

Identifiers

PMID33077516
PMCPMC7939457
OpenAlexW3092727706

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.