Evidence map›Paper›PMID 33074657›Full record

ArticleBiochemistry2020

An Engineered T Cell Receptor Variant Realizes the Limits of Functional Binding Modes.

Nishant K Singh, Jesus A Alonso, Daniel T Harris, Scott D Anderson, Jiaqi Ma, Lance M Hellman, Aaron M Rosenberg, Elizabeth M Kolawole, Brian D Evavold, David M Kranz and 1 more

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.5field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. HLA micropolymorphisms confine neoantigen conformational adaptability and guide T cell receptor selectivity.Proceedings of the National Academy of Sciences of the United States of America · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Nishant K SinghDepartment of Chemistry and Biochemistry and Harper Cancer Research Institute, University of Notre Dame, Notre Dame, Indiana 46556, United States.
Jesus A AlonsoDepartment of Chemistry and Biochemistry and Harper Cancer Research Institute, University of Notre Dame, Notre Dame, Indiana 46556, United States.
Daniel T HarrisDepartment of Biochemistry and Cancer Center at Illinois, University of Illinois, Urbana, Illinois 61801, United States.
Scott D AndersonDepartment of Biochemistry and Cancer Center at Illinois, University of Illinois, Urbana, Illinois 61801, United States.
Jiaqi MaDepartment of Chemistry and Biochemistry and Harper Cancer Research Institute, University of Notre Dame, Notre Dame, Indiana 46556, United States.
Lance M HellmanDepartment of Chemistry and Biochemistry and Harper Cancer Research Institute, University of Notre Dame, Notre Dame, Indiana 46556, United States.
Aaron M RosenbergDepartment of Chemistry and Biochemistry and Harper Cancer Research Institute, University of Notre Dame, Notre Dame, Indiana 46556, United States.
Elizabeth M KolawoleDivision of Microbiology and Immunology, Department of Pathology, University of Utah, Salt Lake City, Utah 84112, United States.
Brian D EvavoldDivision of Microbiology and Immunology, Department of Pathology, University of Utah, Salt Lake City, Utah 84112, United States.
David M KranzDepartment of Biochemistry and Cancer Center at Illinois, University of Illinois, Urbana, Illinois 61801, United States.
Brian M BakerDepartment of Chemistry and Biochemistry and Harper Cancer Research Institute, University of Notre Dame, Notre Dame, Indiana 46556, United States.ORCID 0000-0002-0864-0964
University of Notre Dame · USUniversity of Illinois System · USUniversity of Utah · US

Funding

Structural biophysics and molecular design in cellular immunityR35GM118166 · NIGMS · UNIVERSITY OF NOTRE DAME · PI BAKER, BRIAN M · 2016 to 2025
$4.4M
CD8 T cell antigen recognition during chronic infectionR01AI147641 · NIAID · UNIVERSITY OF UTAH · PI EVAVOLD, BRIAN D · 2020 to 2024
$3.3M
NRSA Training CoreTL1TR002531 · NCATS · INDIANA UNIVERSITY INDIANAPOLIS · PI FOTI, DANIEL JUSTIN, HURLEY, THOMAS D. · 2018 to 2022
$2.5M
Indiana Clinical and Translational Sciences InstituteTL1TR001107 · NCATS · INDIANA UNIVERSITY INDIANAPOLIS · PI DENNE, SCOTT C., SHEKHAR, ANANTHA · 2013 to 2017
$2.0M
Engineering T Cell Receptors for Adoptive Cell TherapiesR01CA178844 · NCI · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI KRANZ, DAVID M. · 2014 to 2018
$1.6M
Phase II SER-CAT Optimization: Acquisition of a next generation area detectorS10RR028976 · NCRR · UNIVERSITY OF GEORGIA · PI WANG, BI-CHENG · 2010 to 2010
$1.5M
Acquition of a microdiffractometer for SER-CATS10RR025528 · NCRR · UNIVERSITY OF GEORGIA · PI ROSE, JOHN PATRICK · 2009 to 2009
$414k
Engineering High-Affinity T Cell Receptors Against Cancer AntigensF30CA180723 · NCI · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI HARRIS, DANIEL · 2013 to 2018
$275k
NCATS NIH HHS TL1 TR001107NCATS NIH HHS TL1 TR002531NCI NIH HHS F30 CA180723NCI NIH HHS R01 CA178844NCRR NIH HHS S10 RR025528NCRR NIH HHS S10 RR028976NIAID NIH HHS R01 AI147641NIGMS NIH HHS R35 GM118166
6 · The paper itself

Abstract

T cell receptors (TCRs) orchestrate cellular immunity by recognizing peptides presented by a range of major histocompatibility complex (MHC) proteins. Naturally occurring TCRs bind the composite peptide/MHC surface, recognizing peptides that are structurally and chemically compatible with the TCR binding site. Here we describe a molecularly evolved TCR variant that binds the human class I MHC protein HLA-A2 independent of the bound peptide, achieved by a drastic perturbation of the TCR binding geometry that places the molecule far from the peptide binding groove. This unique geometry is unsupportive of normal T cell signaling. A substantial divergence between affinity measurements in solution and in two dimensions between proximal cell membranes leads us to attribute the lack of signaling to steric hindrance that limits binding in the confines of a cell-cell interface. Our results provide an example of how receptor binding geometry can impact T cell function and provide further support for the view that germline-encoded residues in TCR binding loops evolved to drive productive TCR recognition and signaling.

Indexed as

Binding SitesHLA-A AntigensHumansMajor Histocompatibility ComplexProtein BindingProtein ConformationReceptors, Antigen, T-CellHLA-A AntigensReceptors, Antigen, T-Cell

Identifiers

PMID33074657
PMCPMC7642186
OpenAlexW3092888196

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.