Evidence map›Paper›PMID 33072173›Full record

ArticlePlant methods2020

A heat-shock inducible system for flexible gene expression in cereals.

Sophie A Harrington, Anna E Backhaus, Samantha Fox, Christian Rogers, Philippa Borrill, Cristobal Uauy, Annis Richardson

Open access · goldAbstract read
In one paragraph

Article in Plant methods, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.7field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 11 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Sophie A HarringtonJohn Innes Centre, Norwich Research Park, Norwich, NR4 7UH UK.
Anna E BackhausJohn Innes Centre, Norwich Research Park, Norwich, NR4 7UH UK.
Samantha FoxJohn Innes Centre, Norwich Research Park, Norwich, NR4 7UH UK.
Christian RogersENSA, Sainsbury Laboratory, University of Cambridge, Cambridge, CB2 1LR UK.
Philippa BorrillSchool of Biosciences, University of Birmingham, Birmingham, B15 2TT UK.
Cristobal UauyJohn Innes Centre, Norwich Research Park, Norwich, NR4 7UH UK.ORCID 0000-0002-9814-1770
Annis RichardsonJohn Innes Centre, Norwich Research Park, Norwich, NR4 7UH UK.ORCID 0000-0002-2061-4902
John Innes Centre · GBUniversity of Birmingham · GBUniversity of Cambridge · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundFunctional characterisation of genes using transgenic methods is increasingly common in cereal crops. Yet standard methods of gene over-expression can lead to undesirable developmental phenotypes, or even embryo lethality, due to ectopic gene expression. Inducible expression systems allow the study of such genes by preventing their expression until treatment with the specific inducer. When combined with the Cre-Lox recombination system, inducible promoters can be used to initiate constitutive expression of a gene of interest. Yet while these systems are well established in dicot model plants, like

resultsHere we present an irreversible heat-shock inducible system developed using Golden Gate-compatible components which utilises Cre recombinase to drive constitutive gene expression in barley and wheat. We show that a heat shock treatment of 38 °C is sufficient to activate the construct and drive expression of the gene of interest. Modulating the duration of heat shock controls the density of induced cells. Short durations of heat shock cause activation of the construct in isolated single cells, while longer durations lead to global construct activation. The system can be successfully activated in multiple tissues and at multiple developmental stages and shows no activation at standard growth temperatures (~ 20 °C).

conclusionsThis system provides an adaptable framework for use in gene functional characterisation in cereal crops. The developed vectors can be easily adapted for specific genes of interest within the Golden Gate cloning system. By using an environmental signal to induce activation of the construct, the system avoids pitfalls associated with consistent and complete application of chemical inducers. As with any inducible system, care must be taken to ensure that the expected construct activation has indeed taken place.

Indexed as

BarleyClonal sectorsCre recombinaseGrassesInducible expressionInducible promotersTransgenicWheat

Identifiers

PMID33072173
PMCPMC7557097
OpenAlexW3093036033

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.