Evidence map›Paper›PMID 33069829›Full record

ArticleGenomics2021

Clustering and classification of virus sequence through music communication protocol and wavelet transform.

Tirthankar Paul, Seppo Vainio, Juha Roning

Abstract read
In one paragraph

Article in Genomics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Tirthankar PaulInfoTech Oulu, Biomimetics and Intelligent Systems Group (BISG), Faculty of Information Technology and Electrical Engineering, University of Oulu, Oulu, Finland. Electronic address: tirthankar.paul@oulu.fi.
Seppo VainioInfoTech Oulu, Faculty of Biochemistry and Molecular Medicine, Biocenter Oulu, Laboratory of Development Biology, University of Oulu, Oulu, Finland. Electronic address: seppo.vainio@oulu.fi.
Juha RoningInfoTech Oulu, Biomimetics and Intelligent Systems Group (BISG), Faculty of Information Technology and Electrical Engineering, University of Oulu, Oulu, Finland. Electronic address: juha.roning@oulu.fi.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The coronavirus pandemic became a major risk in global public health. The outbreak is caused by SARS-CoV-2, a member of the coronavirus family. Though the images of the virus are familiar to us, in the present study, an attempt is made to hear the coronavirus by translating its protein spike into audio sequences. The musical features such as pitch, timbre, volume and duration are mapped based on the coronavirus protein sequence. Three different viruses Influenza, Ebola and Coronavirus were studied and compared through their auditory virus sequences by implementing Haar wavelet transform. The sonification of the coronavirus benefits in understanding the protein structures by enhancing the hidden features. Further, it makes a clear difference in the representation of coronavirus compared with other viruses, which will help in various research works related to virus sequence. This evolves as a simplified and novel way of representing the conventional computational methods.

Indexed as

AlgorithmsGenome, ViralMusicWavelet AnalysisAmino Acid SequenceCluster AnalysisCoronavirusCOVID-19EbolavirusHumansMiddle East Respiratory Syndrome CoronavirusOrthomyxoviridaePandemicsRNA, ViralSARS-CoV-2Severe acute respiratory syndrome-related coronavirusRNA, ViralViral ProteinsCoronavirusHaar waveletMIDIProtein musicSVM

Identifiers

PMID33069829
PMCPMC7561519

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.