Evidence map›Paper›PMID 33069232›Full record

ArticleMicrobial cell factories2020

Improved thermostability of creatinase from Alcaligenes Faecalis through non-biased phylogenetic consensus-guided mutagenesis.

Xue Bai, Daixi Li, Fuqiang Ma, Xi Deng, Manjie Luo, Yan Feng, Guangyu Yang

Open access · goldAbstract read
In one paragraph

Article in Microbial cell factories, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Xue BaiInstitute of Biothermal Science and Technology, University of Shanghai for Science and Technology, Shanghai, 200093, People's Republic of China.
Daixi LiInstitute of Biothermal Science and Technology, University of Shanghai for Science and Technology, Shanghai, 200093, People's Republic of China. dxli75@126.com.
Fuqiang MaCAS Key Lab of Bio-Medical Diagnostics, Suzhou Institute of Biomedical Engineering and Technology, Chinese Academy of Sciences, Suzhou, 215163, Jiangsu, People's Republic of China.
Xi DengState Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, 800 Dongchuan Rd., Shanghai, 200240, People's Republic of China.
Manjie LuoWuhan Hzymes Biotechnology Co., Ltd., Wuhan, 430000, Hubei, People's Republic of China.
Yan FengState Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, 800 Dongchuan Rd., Shanghai, 200240, People's Republic of China.
Guangyu YangState Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, 800 Dongchuan Rd., Shanghai, 200240, People's Republic of China. yanggy@sjtu.edu.cn.ORCID http://orcid.org/0000-0002-2758-4312
Shanghai Jiao Tong University · CNUniversity of Shanghai for Science and Technology · CNChinese Academy of Sciences · CN

Funding

China Postdoctoral Science Foundation 2019M660129Jiangsu Basic Research Plan of Natural Science SBK2019041665National Natural Science Foundation of China 21627812, 31670791National Natural Science Foundation of China 31900911, 21627812
6 · The paper itself

Abstract

backgroundEnzymatic quantification of creatinine has become an essential method for clinical evaluation of renal function. Although creatinase (CR) is frequently used for this purpose, its poor thermostability severely limits industrial applications. Herein, we report a novel creatinase from Alcaligenes faecalis (afCR) with higher catalytic activity and lower K

resultsWe applied a non-biased phylogenetic consensus method to identify 59 candidate consensus residues from 24 creatinase family homologs for screening afCR mutants with improved thermostability. Twenty-one amino acids of afCR were selected to mutagenesis and 11 of them exhibited improved thermostability compared to the parent enzyme (afCR-M0). Combination of single-site mutations in sequential screens resulted in a quadruple mutant D17V/T199S/L6P/T251C (M4-2) which showed ~ 1700-fold enhanced half-life at 57 °C and a 4.2 °C higher T

conclusionsResults of this study clearly demonstrated that the non-biased-phylogenetic consensus design for improvement of thermostability in afCR is effective and promising in improving the thermostability of more enzymes.

Indexed as

TemperatureAlcaligenes faecalisAmino Acid SubstitutionEnzyme StabilityKineticsMolecular Dynamics SimulationMutagenesis, Site-DirectedPhylogenyProtein EngineeringUreohydrolasescreatinaseUreohydrolasesConsensus approachCreatinaseMultiple sequence alignmentPhylogenetic analysisThermostability

Identifiers

PMID33069232
PMCPMC7568399
OpenAlexW3093056379

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.