Evidence map›Paper›PMID 33068917›Full record

ArticleComputational biology and chemistry2020

Alkylated benzimidazoles: Design, synthesis, docking, DFT analysis, ADMET property, molecular dynamics and activity against HIV and YFV.

Ritika Srivastava, Sunil K Gupta, Farha Naaz, Parth Sarthi Sen Gupta, Madhu Yadav, Vishal Kumar Singh, Anuradha Singh, Malay Kumar Rana, Satish Kumar Gupta, Dominique Schols and 1 more

Abstract read
In one paragraph

Article in Computational biology and chemistry, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Recent Advances in Nitrogen-Containing Heterocyclic Scaffolds as Antiviral Agents.Medicinal chemistry (Shariqah (United Arab Emirates)) · 2024
    Pooled it
  2. Article
  3. Review
  4. Review
  5. Article
  6. Review
  7. Synthesis of NovelMolecules (Basel, Switzerland) · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Ritika SrivastavaBioorganic Research Laboratory, Department of Chemistry, University of Allahabad, Allahabad, 211002, India.
Sunil K GuptaBioorganic Research Laboratory, Department of Chemistry, University of Allahabad, Allahabad, 211002, India.
Farha NaazBioorganic Research Laboratory, Department of Chemistry, University of Allahabad, Allahabad, 211002, India.
Parth Sarthi Sen GuptaDepartment of Chemical Sciences, Indian Institute of Science Education and Research Berhampur, Odisha 760010, India.
Madhu YadavBioorganic Research Laboratory, Department of Chemistry, University of Allahabad, Allahabad, 211002, India.
Vishal Kumar SinghBioorganic Research Laboratory, Department of Chemistry, University of Allahabad, Allahabad, 211002, India.
Anuradha SinghBioorganic Research Laboratory, Department of Chemistry, University of Allahabad, Allahabad, 211002, India.
Malay Kumar RanaDepartment of Chemical Sciences, Indian Institute of Science Education and Research Berhampur, Odisha 760010, India.
Satish Kumar GuptaNational Institute of Immunology, Aruna Asaf Ali Marg, New Delhi, India.
Dominique ScholsRega Institute for Medical Research, KU Leuven, Leuven, Belgium.
Ramendra K SinghBioorganic Research Laboratory, Department of Chemistry, University of Allahabad, Allahabad, 211002, India. Electronic address: rksinghsrk@gmail.com.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A series of alkylated benzimidazole derivatives was synthesized and screened for their anti-HIV, anti-YFV, and broad-spectrum antiviral properties. The physicochemical parameters and drug-like properties of the compounds were assessed first, and then docking studies and MD simulations on HIV-RT allosteric sites were conducted to find the possible mode of their action. DFT analysis was also performed to confirm the nature of the hydrogen bonding interaction of active compounds. The in silico studies indicated that the molecules behaved like possible NNRTIs. The nature - polar or non-polar and position of the substituent present at fifth, sixth, and N-1 positions of the benzimidazole moiety played an important role in determining the antiviral properties of the compounds. Among the various compounds, 2-(5,6-dibromo-2-chloro-1H-benzimidazol-1-yl)ethan-1-ol (3a) showed anti-HIV activity with an appreciably low IC

Indexed as

AnimalsBenzimidazolesCatalytic DomainChlorocebus aethiopsDensity Functional TheoryHIVHIV Reverse TranscriptaseMicrobial Sensitivity TestsModels, ChemicalMolecular Docking SimulationMolecular Dynamics SimulationMolecular StructureReverse Transcriptase InhibitorsStructure-Activity RelationshipVero CellsYellow fever virusBenzimidazolesHIV Reverse TranscriptaseReverse Transcriptase InhibitorsAntiviral profileDFTDockingHIVMolecular dynamicsYFV

Identifiers

PMID33068917
PMCPMC7537607

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.