Evidence map›Paper›PMID 33067557›Full record

ArticleCommunications biology2020

Genetic and clinical landscape of breast cancers with germline BRCA1/2 variants.

Yukiko Inagaki-Kawata, Kenichi Yoshida, Nobuko Kawaguchi-Sakita, Masahiro Kawashima, Tomomi Nishimura, Noriko Senda, Yusuke Shiozawa, Yasuhide Takeuchi, Yoshikage Inoue, Aiko Sato-Otsubo and 21 more

Abstract read
In one paragraph

Article in Communications biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed.

  1. Article
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  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Precision clinical medicine · 2024
    Article
  11. Review
  12. Article
  13. Review
  14. Environmental impact on carcinogenesis under BRCA1 haploinsufficiency.Genes and environment : the official journal of the Japanese Environmental Mutagen Society · 2023
    Review
  15. Brca1Cancer science · 2022
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

31 authors.

Yukiko Inagaki-KawataDepartment of Pathology and Tumor Biology, Kyoto University, Kyoto, Japan.
Kenichi YoshidaDepartment of Pathology and Tumor Biology, Kyoto University, Kyoto, Japan.ORCID 0000-0003-4612-2778
Nobuko Kawaguchi-SakitaDepartment of Clinical Oncology, Kyoto University Hospital, Kyoto, Japan.
Masahiro KawashimaDepartment of Breast Surgery, Kyoto University, Kyoto, Japan.
Tomomi NishimuraDepartment of Pathology and Tumor Biology, Kyoto University, Kyoto, Japan.
Noriko SendaDepartment of Breast Surgery, Kyoto University, Kyoto, Japan.
Yusuke ShiozawaDepartment of Pathology and Tumor Biology, Kyoto University, Kyoto, Japan.
Yasuhide TakeuchiDepartment of Pathology and Tumor Biology, Kyoto University, Kyoto, Japan.
Yoshikage InoueDepartment of Pathology and Tumor Biology, Kyoto University, Kyoto, Japan.
Aiko Sato-OtsuboDepartment of Pathology and Tumor Biology, Kyoto University, Kyoto, Japan.
Yoichi FujiiDepartment of Pathology and Tumor Biology, Kyoto University, Kyoto, Japan.
Yasuhito NannyaDepartment of Pathology and Tumor Biology, Kyoto University, Kyoto, Japan.
Eiji SuzukiDepartment of Breast Surgery, Kyoto University, Kyoto, Japan.
Masahiro TakadaDepartment of Breast Surgery, Kyoto University, Kyoto, Japan.
Hiroko TanakaLaboratory of Sequence Analysis, Human Genome Centre, Institute of Medical Science, The University of Tokyo, Tokyo, Japan.ORCID 0000-0001-9634-8922
Yuichi ShiraishiLaboratory of DNA Information Analysis, Human Genome Center, Institute of Medical Science, The University of Tokyo, Tokyo, Japan.
Kenichi ChibaLaboratory of DNA Information Analysis, Human Genome Center, Institute of Medical Science, The University of Tokyo, Tokyo, Japan.
Yuki KataokaHospital Care Research Unit/Department of Respiratory Medicine, Hyogo Prefectural Amagasaki General Medical Center, Amagasaki, Japan.
Masae ToriiDepartment of Breast Surgery, Japanese Red Cross Wakayama Medical Center, Wakayama, Japan.
Hiroshi YoshibayashiDepartment of Breast Surgery, Japanese Red Cross Wakayama Medical Center, Wakayama, Japan.
Kazuhiko YamagamiDepartment of Breast Surgery, Shinko Hospital, Kobe, Japan.
Ryuji OkamuraDepartment of Breast Surgery, Yamatotakada Municipal Hospital, Yamatotakada, Japan.
Yoshio MoriguchiDepartment of Breast Surgery, Kyoto City Hospital, Kyoto, Japan.ORCID 0000-0002-9268-5531
Hironori KatoDepartment of Breast Surgery, Kobe City Medical Center General Hospital, Kobe, Japan.
Shigeru TsuyukiDepartment of Breast Surgery, Osaka Red Cross Hospital, Osaka, Japan.
Akira YamauchiDepartment of Breast Surgery, Kitano Hospital, Osaka, Japan.
Hirofumi SuwaDepartment of Breast Surgery, Hyogo Prefectural Amagasaki General Medical Center, Amagasaki, Japan.
Takashi InamotoTenri Health Care University, Tenri, Japan.
Satoru MiyanoLaboratory of Sequence Analysis, Human Genome Centre, Institute of Medical Science, The University of Tokyo, Tokyo, Japan.
Seishi OgawaDepartment of Pathology and Tumor Biology, Kyoto University, Kyoto, Japan. sogawa-tky@umin.ac.jp.ORCID 0000-0002-7778-5374
Masakazu ToiDepartment of Breast Surgery, Kyoto University, Kyoto, Japan. toi@kuhp.kyoto-u.ac.jp.ORCID 0000-0003-1488-9958

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The genetic and clinical characteristics of breast tumors with germline variants, including their association with biallelic inactivation through loss-of-heterozygosity (LOH) and second somatic mutations, remain elusive. We analyzed germline variants of 11 breast cancer susceptibility genes for 1,995 Japanese breast cancer patients, and identified 101 (5.1%) pathogenic variants, including 62 BRCA2 and 15 BRCA1 mutations. Genetic analysis of 64 BRCA1/2-mutated tumors including TCGA dataset tumors, revealed an association of biallelic inactivation with more extensive deletions, copy neutral LOH, gain with LOH and younger onset. Strikingly, TP53 and RB1 mutations were frequently observed in BRCA1- (94%) and BRCA2- (9.7%) mutated tumors with biallelic inactivation. Inactivation of TP53 and RB1 together with BRCA1 and BRCA2, respectively, involved LOH of chromosomes 17 and 13. Notably, BRCA1/2 tumors without biallelic inactivation were indistinguishable from those without germline variants. Our study highlights the heterogeneity and unique clonal selection pattern in breast cancers with germline variants.

Indexed as

Germ-Line MutationAdultAgedAllelesBiomarkers, TumorBRCA1 ProteinBRCA2 ProteinBreast NeoplasmsFemaleGene FrequencyGene SilencingGenetic Association StudiesGenetic Predisposition to DiseaseHumansLoss of HeterozygosityMiddle AgedBiomarkers, TumorBRCA1 ProteinBRCA1 protein, humanBRCA2 ProteinBRCA2 protein, human

Identifiers

PMID33067557
PMCPMC7567851

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.