Evidence map›Paper›PMID 33067552›Full record

ArticleScientific reports2020

Protein conformational entropy is not slaved to water.

Bryan S Marques, Matthew A Stetz, Christine Jorge, Kathleen G Valentine, A Joshua Wand, Nathaniel V Nucci

Abstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Hydration (HJournal of the American Chemical Society · 2025
    Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Deep mining of the protein energy landscape.Structural dynamics (Melville, N.Y.) · 2023
    Article
  8. Water Networks Repopulate Protein-Ligand Interfaces with Temperature.Angewandte Chemie (International ed. in English) · 2022
    Article
  9. Review
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Bryan S MarquesJohnson Research Foundation and Department of Biochemistry and Biophysics, University of Pennsylvania, Philadelphia, PA, USA.
Matthew A StetzJohnson Research Foundation and Department of Biochemistry and Biophysics, University of Pennsylvania, Philadelphia, PA, USA.
Christine JorgeJohnson Research Foundation and Department of Biochemistry and Biophysics, University of Pennsylvania, Philadelphia, PA, USA.
Kathleen G ValentineJohnson Research Foundation and Department of Biochemistry and Biophysics, University of Pennsylvania, Philadelphia, PA, USA.
A Joshua WandJohnson Research Foundation and Department of Biochemistry and Biophysics, University of Pennsylvania, Philadelphia, PA, USA. wand@tamu.edu.
Nathaniel V NucciDepartment of Physics and Astronomy and Department of Molecular and Cellular Biosciences, Rowan University, 201 Mullica Hill Road, Glassboro, NJ, 08028, USA. nucci@rowan.edu.

Funding

STRUCTURAL BIOLOGY TRAINING PROGRAMT32GM008275 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI WAND, A. JOSHUA · 1988 to 2018
$6.0M
Predoctoral Training at the Chemistry-Biology InterfaceT32GM071339 · NIGMS · WISTAR INSTITUTE · PI MARMORSTEIN, RONEN, SPEICHER, DAVID W. · 2005 to 2019
$3.2M
The role of the free energy landscape in Parkin's function and dysfunction in health and diseaseR01GM129076 · NIGMS · TEXAS A&M AGRILIFE RESEARCH · PI WAND, A. JOSHUA · 2020 to 2023
$1.6M
Fluctuations and entropy in the energetics and function of protein complexesR01GM102447 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI WAND, A. JOSHUA · 2012 to 2015
$1.4M
NMR Investigation of Protein Hydration and Dynamics under NanoconfinementF32GM087099 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI NUCCI, NATHANIEL V · 2009 to 2011
$144k
Site-resolved hydration dynamics of PDZ domainsF31GM116520 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI JORGE, CHRISTINE · 2015 to 2017
$104k
NIGMS NIH HHS F31 GM116520NIGMS NIH HHS F32 GM087099NIGMS NIH HHS R01 GM102447NIGMS NIH HHS R01 GM129076NIH HHS F32 GM 087099NIH HHS T32 GM008275NIH HHS T32 GM071339
6 · The paper itself

Abstract

Conformational entropy can be an important element of the thermodynamics of protein functions such as the binding of ligands. The observed role for conformational entropy in modulating molecular recognition by proteins is in opposition to an often-invoked theory for the interaction of protein molecules with solvent water. The "solvent slaving" model predicts that protein motion is strongly coupled to various aspects of water such as bulk solvent viscosity and local hydration shell dynamics. Changes in conformational entropy are manifested in alterations of fast internal side chain motion that is detectable by NMR relaxation. We show here that the fast-internal side chain dynamics of several proteins are unaffected by changes to the hydration layer and bulk water. These observations indicate that the participation of conformational entropy in protein function is not dictated by the interaction of protein molecules and solvent water under the range of conditions normally encountered.

Indexed as

Protein ConformationBiophysical PhenomenaEntropyLigandsMagnetic Resonance SpectroscopyProteinsSolventsThermodynamicsUbiquitinViscosityWaterLigandsProteinsSolventsUbiquitinWater

Identifiers

PMID33067552
PMCPMC7567893

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.