Evidence map›Paper›PMID 33067423›Full record

ArticleNature communications2020

Multivalent interactions drive nucleosome binding and efficient chromatin deacetylation by SIRT6.

Wallace H Liu, Jie Zheng, Jessica L Feldman, Mark A Klein, Vyacheslav I Kuznetsov, Craig L Peterson, Patrick R Griffin, John M Denu

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
4.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 59 citations in OpenAlex.

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  13. Beyond the mono-nucleosome.Biochemical Society transactions · 2025
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Wallace H LiuDepartment of Biomolecular Chemistry, University of Wisconsin-Madison, Madison, WI, 53706, USA.
Jie ZhengDepartment of Molecular Medicine, Scripps Research Florida, Jupiter, FL, 33458, USA.
Jessica L FeldmanProgram in Molecular Medicine, University of Massachusetts Medical School, Worcester, MA, 01605, USA.
Mark A KleinDepartment of Biomolecular Chemistry, University of Wisconsin-Madison, Madison, WI, 53706, USA.ORCID 0000-0002-6782-8502
Vyacheslav I KuznetsovDepartment of Biomolecular Chemistry, University of Wisconsin-Madison, Madison, WI, 53706, USA.
Craig L PetersonProgram in Molecular Medicine, University of Massachusetts Medical School, Worcester, MA, 01605, USA.
Patrick R GriffinDepartment of Molecular Medicine, Scripps Research Florida, Jupiter, FL, 33458, USA.ORCID 0000-0002-3404-690X
John M DenuDepartment of Biomolecular Chemistry, University of Wisconsin-Madison, Madison, WI, 53706, USA. john.denu@wisc.edu.ORCID 0000-0001-9415-0365
University of Wisconsin–Madison · USScripps Research Institute · USUniversity of Massachusetts Chan Medical School · US

Funding

Regulation of chromatin dynamicsR35GM122519 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI Craig L Peterson · 2017 to 2026
$9.2M
TRAINING IN NUTRITIONT32DK007665 · NIDDK · UNIVERSITY OF WISCONSIN-MADISON · PI GUY E GROBLEWSKI, Chi- Liang Eric Yen · 1993 to 2026
$9.2M
Reversible protein acetylation and sirtuin functionR01GM065386 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI DENU, JOHN M · 2003 to 2022
$7.3M
The role of Histone H3 lysine 56 acetylation in noncoding transcription and chromatin architectureF32GM119229 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI FELDMAN, JESSICA · 2016 to 2018
$156k
Molecular mechanisms of SIRT6 activation by endogenous effectorsF32GM128399 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI LIU, WALLACE H · 2019 to 2019
$66k
NIDDK NIH HHS T32 DK007665NIGMS NIH HHS F32 GM119229NIGMS NIH HHS F32 GM128399NIGMS NIH HHS R01 GM065386NIGMS NIH HHS R35 GM122519
6 · The paper itself

Abstract

The protein deacetylase SIRT6 maintains cellular homeostasis through multiple pathways that include the deacetylation of histone H3 and repression of transcription. Prior work suggests that SIRT6 is associated with chromatin and can substantially reduce global levels of H3 acetylation, but how SIRT6 is able to accomplish this feat is unknown. Here, we describe an exquisitely tight interaction between SIRT6 and nucleosome core particles, in which a 2:1 enzyme:nucleosome complex assembles via asymmetric binding with distinct affinities. While both SIRT6 molecules associate with the acidic patch on the nucleosome, we find that the intrinsically disordered SIRT6 C-terminus promotes binding at the higher affinity site through recognition of nucleosomal DNA. Together, multivalent interactions couple productive binding to efficient deacetylation of histones on endogenous chromatin. Unique among histone deacetylases, SIRT6 possesses the intrinsic capacity to tightly interact with nucleosomes for efficient activity.

Indexed as

AcetylationChromatinHistonesHumansNucleosomesProtein BindingProtein DomainsSirtuinsChromatinHistonesNucleosomesSIRT6 protein, humanSirtuins

Identifiers

PMID33067423
PMCPMC7568541
OpenAlexW3093443890

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.