Evidence map›Paper›PMID 33067419›Full record

ArticleNature communications2020

Standardization and harmonization of distributed multi-center proteotype analysis supporting precision medicine studies.

Yue Xuan, Nicholas W Bateman, Sebastien Gallien, Sandra Goetze, Yue Zhou, Pedro Navarro, Mo Hu, Niyati Parikh, Brian L Hood, Kelly A Conrads and 23 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed
5.5field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 95 citations in OpenAlex.

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  18. Laser capture microdissection.Nature reviews. Methods primers · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

33 authors at 17 institutions in 11 countries.

Yue XuanThermo Fisher Scientific GmbH, Hanna-Kunath Str. 11, Bremen, 28199, Germany. yue.xuan@thermofisher.com.
Nicholas W BatemanGynecologic Cancer Center of Excellence, Henry M. Jackson Foundation for the Advancement of Military Medicine, Inc., Uniformed Services University and Walter Reed National Military Medical Center, 8901 Wisconsin Avenue, Bethesda, 20889, MD, USA.ORCID 0000-0002-4425-9511
Sebastien GallienThermo Fisher Scientific, Paris, France.
Sandra GoetzeInstitute of Translational Medicine, Department of Health Sciences and Technology, ETH Zurich, Switzerland.ORCID 0000-0001-6880-8020
Yue ZhouThermo Fisher Scientific Co. Ltd, Shanghai, China.
Pedro NavarroThermo Fisher Scientific GmbH, Hanna-Kunath Str. 11, Bremen, 28199, Germany.
Mo HuThermo Fisher Scientific Co. Ltd, Shanghai, China.ORCID 0000-0001-7364-2790
Niyati ParikhGynecologic Cancer Center of Excellence, Henry M. Jackson Foundation for the Advancement of Military Medicine, Inc., Uniformed Services University and Walter Reed National Military Medical Center, 8901 Wisconsin Avenue, Bethesda, 20889, MD, USA.
Brian L HoodGynecologic Cancer Center of Excellence, Henry M. Jackson Foundation for the Advancement of Military Medicine, Inc., Uniformed Services University and Walter Reed National Military Medical Center, 8901 Wisconsin Avenue, Bethesda, 20889, MD, USA.
Kelly A ConradsGynecologic Cancer Center of Excellence, Henry M. Jackson Foundation for the Advancement of Military Medicine, Inc., Uniformed Services University and Walter Reed National Military Medical Center, 8901 Wisconsin Avenue, Bethesda, 20889, MD, USA.
Christina LoosseLeibniz-Institut für Analytische Wissenschaften-ISAS-e.V., Bunsen-Kirchhoff-Straße 11, 44139, Dortmund, Germany.
Reta Birhanu KitataInstitute of Chemistry, Academia Sinica, 128 Academia Road, Section 2, Nankang, Taipei, 11529, Taiwan.ORCID 0000-0002-8973-7679
Sander R PiersmaDepartment of Medical Oncology, Cancer Center Amsterdam, Amsterdam UMC, De Boelelaan 1117, 1081 HV, Amsterdam, the Netherlands.
Davide ChiasseriniDepartment of Medical Oncology, Cancer Center Amsterdam, Amsterdam UMC, De Boelelaan 1117, 1081 HV, Amsterdam, the Netherlands.
Hongwen ZhuShanghai Institute of Materia Medica, Chinese Academy of Sciences, 555 Zuchongzhi Road, Shanghai, 201203, China.
Guixue HouBGI-SHENZHEN, Beishan Road, Yantian District, Shenzhen, 518083, Guangdong, China.ORCID 0000-0003-0342-9593
Muhammad TahirDepartment of Biochemistry and Molecular Biology, University of Southern Denmark, Campusvej 55, Odense M, DK-5230, Denmark.ORCID 0000-0002-1833-0206
Andrew MacklinPrincess Margaret Cancer Centre, 101 College Street PMCRT 9-807, Toronto, ON, M5G 1L7, Canada.
Amanda KhooPrincess Margaret Cancer Centre, 101 College Street PMCRT 9-807, Toronto, ON, M5G 1L7, Canada.
Xiuxuan SunNational Translational Science Center for Molecular Medicine, Xi'an, 710032, China.
Ben CrossettSydney Mass Spectrometry, The University of Sydney, NSW, 2006, Sydney, Australia.ORCID 0000-0001-5366-4554
Albert SickmannLeibniz-Institut für Analytische Wissenschaften-ISAS-e.V., Bunsen-Kirchhoff-Straße 11, 44139, Dortmund, Germany.
Yu-Ju ChenInstitute of Chemistry, Academia Sinica, 128 Academia Road, Section 2, Nankang, Taipei, 11529, Taiwan.
Connie R JimenezDepartment of Medical Oncology, Cancer Center Amsterdam, Amsterdam UMC, De Boelelaan 1117, 1081 HV, Amsterdam, the Netherlands.
Hu ZhouShanghai Institute of Materia Medica, Chinese Academy of Sciences, 555 Zuchongzhi Road, Shanghai, 201203, China.ORCID 0000-0001-7006-4737
Siqi LiuBGI-SHENZHEN, Beishan Road, Yantian District, Shenzhen, 518083, Guangdong, China.ORCID 0000-0001-9744-3681
Martin R LarsenDepartment of Biochemistry and Molecular Biology, University of Southern Denmark, Campusvej 55, Odense M, DK-5230, Denmark.ORCID 0000-0001-6203-0123
Thomas KislingerPrincess Margaret Cancer Centre, 101 College Street PMCRT 9-807, Toronto, ON, M5G 1L7, Canada.ORCID 0000-0003-3525-5540
Zhinan ChenNational Translational Science Center for Molecular Medicine, Xi'an, 710032, China.
Benjamin L ParkerSchool of Life and Environmental Science, The University of Sydney, NSW, 2006, Sydney, Australia.
Stuart J CordwellSchool of Life and Environmental Science, The University of Sydney, NSW, 2006, Sydney, Australia.
Bernd WollscheidInstitute of Translational Medicine, Department of Health Sciences and Technology, ETH Zurich, Switzerland. wbernd@ethz.ch.ORCID 0000-0002-3923-1610
Thomas P ConradsWomen's Health Integrated Research Center, Women's Service Line, Inova Health System, 3289 Woodburn Bldg, Annandale, VA, 22003, USA. conrads@whirc.org.ORCID 0000-0003-4742-3281
Henry M. Jackson Foundation · USPrincess Margaret Cancer Centre · CAThe University of Sydney · AUAir Force Medical University · CNAmsterdam University Medical Centers · NLBGI Group (China) · CNChinese Academy of Sciences · CNInstitute of Chemistry, Academia Sinica · TWSIB Swiss Institute of Bioinformatics · CHThermo Fisher Scientific (China) · CNThermo Fisher Scientific (Germany) · DEUniversity of Southern Denmark · DKInova Health System · USLeibniz Institute for Analytical Sciences - ISAS · DEThermo Fisher Scientific (United States) · USUniversity of Aberdeen · GBUniversity of Manchester · GB

Funding

Development of Protein Biomarkers in Post-DRE Urine for use in Liquid Biopsy of Prostate CancerU01CA214194 · NCI · EASTERN VIRGINIA MEDICAL SCHOOL · PI BOUTROS, PAUL CHRISTOPHER, KISLINGER, THOMAS · 2016 to 2021
$2.5M
CIHR PJT 156357NCI NIH HHS U01 CA214194
6 · The paper itself

Abstract

Cancer has no borders: Generation and analysis of molecular data across multiple centers worldwide is necessary to gain statistically significant clinical insights for the benefit of patients. Here we conceived and standardized a proteotype data generation and analysis workflow enabling distributed data generation and evaluated the quantitative data generated across laboratories of the international Cancer Moonshot consortium. Using harmonized mass spectrometry (MS) instrument platforms and standardized data acquisition procedures, we demonstrate robust, sensitive, and reproducible data generation across eleven international sites on seven consecutive days in a 24/7 operation mode. The data presented from the high-resolution MS1-based quantitative data-independent acquisition (HRMS1-DIA) workflow shows that coordinated proteotype data acquisition is feasible from clinical specimens using such standardized strategies. This work paves the way for the distributed multi-omic digitization of large clinical specimen cohorts across multiple sites as a prerequisite for turning molecular precision medicine into reality.

Indexed as

Cell Line, TumorFemaleHumansMass SpectrometryOvarian NeoplasmsPrecision MedicineProteomeProteomicsReference StandardsWorkflowProteome

Identifiers

PMID33067419
PMCPMC7568553
OpenAlexW3093407181

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.