Evidence map›Paper›PMID 33067396›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2020

Histone H3.3 G34 mutations promote aberrant PRC2 activity and drive tumor progression.

Siddhant U Jain, Sima Khazaei, Dylan M Marchione, Stefan M Lundgren, Xiaoshi Wang, Daniel N Weinberg, Shriya Deshmukh, Nikoleta Juretic, Chao Lu, C David Allis and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 71 papers.

0numbers the graph read from it
0cells of the map it votes in
71citing papers in PubMed
5.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

71 citing papers in PubMed, 95 citations in OpenAlex.

  1. Review
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  6. Case Report: Identification of rareFrontiers in oncology · 2026
    Article
  7. Article
  8. Review
  9. Review
  10. Investigating oncoprotein-mediated chromatin dysregulation inbioRxiv : the preprint server for biology · 2025
    Article
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  15. Article
  16. Review
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11 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 6 institutions in 2 countries.

Siddhant U JainDepartment of Biomolecular Chemistry, School of Medicine and Public Health, University of Wisconsin, Madison, WI 53706.ORCID 0000-0002-7390-6757
Sima KhazaeiDepartment of Human Genetics, McGill University, Montreal, QC H3A 1B1, Canada.ORCID 0000-0002-0929-9366
Dylan M MarchioneDepartment of Biochemistry and Biophysics, University of Pennsylvania, Philadelphia, PA 19104.ORCID 0000-0001-6941-0604
Stefan M LundgrenDepartment of Biomolecular Chemistry, School of Medicine and Public Health, University of Wisconsin, Madison, WI 53706.
Xiaoshi WangDepartment of Biochemistry and Biophysics, University of Pennsylvania, Philadelphia, PA 19104.
Daniel N WeinbergLaboratory of Chromatin Biology and Epigenetics, The Rockefeller University, New York, NY 10065.ORCID 0000-0002-6718-3724
Shriya DeshmukhDivision of Experimental Medicine, McGill University, Montreal, QC H4A 3J1, Canada.ORCID 0000-0001-9086-3261
Nikoleta JureticDepartment of Human Genetics, McGill University, Montreal, QC H3A 1B1, Canada.ORCID 0000-0001-8265-8305
Chao LuDepartment of Genetics and Development, Columbia University Irving Medical Center, New York, NY 10032.
C David AllisLaboratory of Chromatin Biology and Epigenetics, The Rockefeller University, New York, NY 10065.ORCID 0000-0001-7589-713X
Benjamin A GarciaDepartment of Biochemistry and Biophysics, University of Pennsylvania, Philadelphia, PA 19104.
Nada JabadoDepartment of Human Genetics, McGill University, Montreal, QC H3A 1B1, Canada.
Peter W LewisDepartment of Biomolecular Chemistry, School of Medicine and Public Health, University of Wisconsin, Madison, WI 53706; peter.lewis@wisc.edu.ORCID 0000-0002-9816-7823
McGill University Health Centre · CAUniversity of Pennsylvania · USUniversity of Wisconsin–Madison · USRockefeller University · USColumbia University Irving Medical Center · USMcGill University · CA

Funding

UW COMPREHENSIVE CANCER CENTER SUPPORTP30CA014520 · NCI · UNIVERSITY OF WISCONSIN-MADISON · PI AMY TRENTHAM-DIETZ · 1985 to 2026
$142.6M
Weill Cornell/Rockefeller/Sloan-Kettering MST ProgramT32GM007739 · NIGMS · WEILL MEDICAL COLL OF CORNELL UNIV · PI HSU, KATHARINE C · 1985 to 2023
$51.1M
Shared Resources Core 2: Quantitative Proteomics CoreP01CA196539 · NCI · ROCKEFELLER UNIVERSITY · PI GARCIA, BENJAMIN A · 2015 to 2024
$17.6M
NRSA Training CoreTL1TR001880 · NCATS · UNIVERSITY OF PENNSYLVANIA · PI MEAGHER, EMMA ANNE · 2016 to 2025
$10.0M
STRUCTURAL BIOLOGY TRAINING PROGRAMT32GM008275 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI WAND, A. JOSHUA · 1988 to 2018
$6.0M
Viral modulation of epitranscriptomic mechanismsR01AI118891 · NIAID · WASHINGTON UNIVERSITY · PI GARCIA, BENJAMIN A, WEITZMAN, MATTHEW D. · 2015 to 2025
$5.4M
Novel Methodology for Quantitative High-throughput Cancer EpigeneticsDP2OD007447 · OD · UNIVERSITY OF PENNSYLVANIA · PI GARCIA, BENJAMIN A · 2010 to 2010
$2.4M
Understanding the Role of Combinatorial Histone PTM PatternsR01GM110174 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI GARCIA, BENJAMIN A · 2014 to 2017
$1.3M
NSD1 Inactivation in Head and Neck CancerR00CA212257 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI LU, CHAO · 2018 to 2020
$686k
Perturbation of Polycomb-mediated gene repression by histone H3 mutations.F30CA224971 · NCI · WEILL MEDICAL COLL OF CORNELL UNIV · PI WEINBERG, DANIEL N · 2018 to 2020
$150k
CIHRNCATS NIH HHS TL1 TR001880NCI NIH HHS F30 CA224971NCI NIH HHS P01 CA196539NCI NIH HHS P30 CA014520NCI NIH HHS R00 CA212257NIAID NIH HHS R01 AI118891NIGMS NIH HHS R01 GM110174NIGMS NIH HHS T32 GM007739NIGMS NIH HHS T32 GM008275NIH HHS DP2 OD007447
6 · The paper itself

Abstract

A high percentage of pediatric gliomas and bone tumors reportedly harbor missense mutations at glycine 34 in genes encoding histone variant H3.3. We find that these H3.3 G34 mutations directly alter the enhancer chromatin landscape of mesenchymal stem cells by impeding methylation at lysine 36 on histone H3 (H3K36) by SETD2, but not by the NSD1/2 enzymes. The reduction of H3K36 methylation by G34 mutations promotes an aberrant gain of PRC2-mediated H3K27me2/3 and loss of H3K27ac at active enhancers containing SETD2 activity. This altered histone modification profile promotes a unique gene expression profile that supports enhanced tumor development in vivo. Our findings are mirrored in G34W-containing giant cell tumors of bone where patient-derived stromal cells exhibit gene expression profiles associated with early osteoblastic differentiation. Overall, we demonstrate that H3.3 G34 oncohistones selectively promote PRC2 activity by interfering with SETD2-mediated H3K36 methylation. We propose that PRC2-mediated silencing of enhancers involved in cell differentiation represents a potential mechanism by which H3.3 G34 mutations drive these tumors.

Indexed as

ChromatinGene ExpressionGene Expression RegulationGliomaHEK293 CellsHistone-Lysine N-MethyltransferaseHistonesHumansLysineMesenchymal Stem CellsMethylationMutationNeoplastic ProcessesPolycomb Repressive Complex 1Polycomb Repressive Complex 2Protein Processing, Post-TranslationalChromatinHistone-Lysine N-MethyltransferaseHistonesLysinePolycomb Repressive Complex 1Polycomb Repressive Complex 2SETD2 protein, humanH3.3 G34 mutationsNSD1/2oncohistonesPRC2SETD2

Identifiers

PMID33067396
PMCPMC7959516
OpenAlexW3093456436

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.