Evidence map›Paper›PMID 33067392›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2020

Desmosome architecture derived from molecular dynamics simulations and cryo-electron tomography.

Mateusz Sikora, Utz H Ermel, Anna Seybold, Michael Kunz, Giulia Calloni, Julian Reitz, R Martin Vabulas, Gerhard Hummer, Achilleas S Frangakis

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 56 citations in OpenAlex.

  1. Article
  2. Review
  3. Glycans Modulate the Adsorption of RBD Glycoproteins on Polarizable Surfaces.Journal of chemical information and modeling · 2026
    Article
  4. Article
  5. Article
  6. Structural Insights into Ordered Multicomponent Assemblies in Cell Junctions.Advances in experimental medicine and biology · 2026
    Review
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. The desmosome comes into focus.The Journal of cell biology · 2024
    Review
  16. Article
  17. Article
  18. Article
  19. Engineering the Interactions of Classical Cadherin Cell-Cell Adhesion Proteins.Journal of immunology (Baltimore, Md. : 1950) · 2023
    Review
  20. Antiparallel dimer structure of CELSR cadherin in solution revealed by high-speed atomic force microscopy.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Mateusz SikoraTheoretical Biophysics Department, Max Planck Institute for Biophysics, 60438 Frankfurt, Germany.ORCID 0000-0003-1691-4045
Utz H ErmelBuchmann Institute for Molecular Life Sciences, 60438 Frankfurt, Germany.
Anna SeyboldBuchmann Institute for Molecular Life Sciences, 60438 Frankfurt, Germany.
Michael KunzBuchmann Institute for Molecular Life Sciences, 60438 Frankfurt, Germany.
Giulia CalloniBuchmann Institute for Molecular Life Sciences, 60438 Frankfurt, Germany.
Julian ReitzBuchmann Institute for Molecular Life Sciences, 60438 Frankfurt, Germany.ORCID 0000-0002-0393-0655
R Martin VabulasInstitute of Biochemistry, Charité-Universitätsmedizin Berlin, 10117 Berlin, Germany.ORCID 0000-0001-8519-4489
Gerhard HummerTheoretical Biophysics Department, Max Planck Institute for Biophysics, 60438 Frankfurt, Germany; gerhard.hummer@biophys.mpg.de achilleas.frangakis@biophysik.org.ORCID 0000-0001-7768-746X
Achilleas S FrangakisBuchmann Institute for Molecular Life Sciences, 60438 Frankfurt, Germany; gerhard.hummer@biophys.mpg.de achilleas.frangakis@biophysik.org.ORCID 0000-0002-4364-6202
Goethe University Frankfurt · DECharité - Universitätsmedizin Berlin · DEMax Planck Institute of Biophysics · DEUniversity of Vienna · AT

Funding

Austrian Science Fund FWF J 4332
6 · The paper itself

Abstract

Desmosomes are cell-cell junctions that link tissue cells experiencing intense mechanical stress. Although the structure of the desmosomal cadherins is known, the desmosome architecture-which is essential for mediating numerous functions-remains elusive. Here, we recorded cryo-electron tomograms (cryo-ET) in which individual cadherins can be discerned; they appear variable in shape, spacing, and tilt with respect to the membrane. The resulting sub-tomogram average reaches a resolution of ∼26 Å, limited by the inherent flexibility of desmosomes. To address this challenge typical of dynamic biological assemblies, we combine sub-tomogram averaging with atomistic molecular dynamics (MD) simulations. We generate models of possible cadherin arrangements and perform an in silico screening according to biophysical and structural properties extracted from MD simulation trajectories. We find a truss-like arrangement of cadherins that resembles the characteristic footprint seen in the electron micrograph. The resulting model of the desmosomal architecture explains their unique biophysical properties and strength.

Indexed as

CadherinsDesmosomesElectron Microscope TomographyHumansIntercellular JunctionsMolecular Dynamics SimulationCadherinscell–cell adhesioncryo-electron tomographydesmosomemolecular dynamics simulations

Identifiers

PMID33067392
PMCPMC7959525
OpenAlexW3092854034

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.