Evidence map›Paper›PMID 33066648›Full record

ArticleGenes2020

Drought-Tolerance Gene Identification Using Genome Comparison and Co-Expression Network Analysis of Chromosome Substitution Lines in Rice.

Chutarat Punchkhon, Kitiporn Plaimas, Teerapong Buaboocha, Jonaliza L Siangliw, Theerayut Toojinda, Luca Comai, Nuria De Diego, Lukáš Spíchal, Supachitra Chadchawan

Open access · goldAbstract read
In one paragraph

Article in Genes, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 14 citations in OpenAlex.

  1. Review
  2. Growth and physiological response of YuluPlant signaling & behavior · 2024
    Article
  3. Article
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  5. Review
  6. Role ofPlants (Basel, Switzerland) · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 3 countries.

Chutarat PunchkhonProgram in Biotechnology, Faculty of Science, Chulalongkorn University, Bangkok 10300, Thailand.
Kitiporn PlaimasDepartment of Mathematics and Computer Science, Faculty of Science, Chulalongkorn University, Bangkok 10300, Thailand.ORCID 0000-0002-0416-8316
Teerapong BuaboochaOmics Science and Bioinformatics Center, Faculty of Science, Chulalongkorn University, Bangkok 10300, Thailand.
Jonaliza L SiangliwNational Center for Genetic Engineering and Biotechnology, National Science and Technology Development Agency, 113 Phahonyothin Rd. Khlong Nueng, Khlong Luang, Pathumthani 12120, Thailand.
Theerayut ToojindaNational Center for Genetic Engineering and Biotechnology, National Science and Technology Development Agency, 113 Phahonyothin Rd. Khlong Nueng, Khlong Luang, Pathumthani 12120, Thailand.
Luca ComaiGenome Center and Department of Plant Biology, UC Davis Genome Center, UC Davis, Davis, CA 95616, USA.
Nuria De DiegoDepartment of Chemical Biology and Genetics, Centre of the Region Haná for Biotechnological and Agricultural Research, Faculty of Science, Palacký University, Šlechtitelů 27, CZ-783 71 Olomouc, Czech Republic.ORCID 0000-0003-4539-2696
Lukáš SpíchalDepartment of Chemical Biology and Genetics, Centre of the Region Haná for Biotechnological and Agricultural Research, Faculty of Science, Palacký University, Šlechtitelů 27, CZ-783 71 Olomouc, Czech Republic.ORCID 0000-0001-6483-8628
Supachitra ChadchawanCenter of Excellence in Environment and Plant Physiology, Department of Botany, Faculty of Science, Chulalongkorn University, Bangkok 10300, Thailand.
Chulalongkorn University · THNational Science and Technology Development Agency · THPalacký University Olomouc · CZUniversity of California, Davis · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Drought stress limits plant growth and productivity. It triggers many responses by inducing changes in plant morphology and physiology. KDML105 rice is a key rice variety in Thailand and is normally grown in the northeastern part of the country. The chromosome segment substitution lines (CSSLs) were developed by transferring putative drought tolerance loci (QTLs) on chromosome 1, 3, 4, 8, or 9 into the KDML105 rice genome. CSSL104 is a drought-tolerant line with higher net photosynthesis and leaf water potential than KDML105 rice. The analysis of CSSL104 gene regulation identified the loci associated with these traits via gene co-expression network analysis. Most of the predicted genes are involved in the photosynthesis process. These genes are also conserved in

Indexed as

Adaptation, PhysiologicalDroughtsGene Expression Regulation, PlantQuantitative Trait LociChromosomes, PlantGene Expression ProfilingGene Regulatory NetworksOryzaPlant ProteinsPlant Proteinsco-expression networkCSSLsdrought stress‘KDML105’ rice

Identifiers

PMID33066648
PMCPMC7602393
OpenAlexW3093268818

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.