Evidence map›Paper›PMID 33066232›Full record

ArticlePathogens (Basel, Switzerland)2020

Insights into Genomic Epidemiology, Evolution, and Transmission Dynamics of Genotype VII of Class II Newcastle Disease Virus in China.

Bin Xiang, Libin Chen, Juncheng Cai, Jianpeng Liang, Qiuyan Lin, Chenggang Xu, Chan Ding, Ming Liao, Tao Ren

Open access · goldAbstract read
In one paragraph

Article in Pathogens (Basel, Switzerland), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.2field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 25 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Bin XiangCollege of Veterinary Medicine, South China Agricultural University, Guangzhou 510642, China.
Libin ChenCollege of Veterinary Medicine, South China Agricultural University, Guangzhou 510642, China.
Juncheng CaiCollege of Veterinary Medicine, South China Agricultural University, Guangzhou 510642, China.
Jianpeng LiangCollege of Veterinary Medicine, South China Agricultural University, Guangzhou 510642, China.
Qiuyan LinCollege of Veterinary Medicine, South China Agricultural University, Guangzhou 510642, China.
Chenggang XuCollege of Veterinary Medicine, South China Agricultural University, Guangzhou 510642, China.
Chan DingShanghai Veterinary Research Institute (SHVRI), Chinese Academy of Agricultural Sciences (CAAS), Shanghai 200241, China.
Ming LiaoCollege of Veterinary Medicine, South China Agricultural University, Guangzhou 510642, China.
Tao RenCollege of Veterinary Medicine, South China Agricultural University, Guangzhou 510642, China.
South China Agricultural University · CNKey Laboratory of Guangdong Province · CNShanghai Veterinary Research Institute · CN

Funding

China Postdoctoral Science Foundation 2018M643107National Natural Science Foundation of China 31872492National Natural Science Foundation of China 31902251
6 · The paper itself

Abstract

Newcastle disease virus (NDV) is distributed worldwide and has caused significant losses to the poultry industry. Almost all virulent NDV strains belong to class II, among which genotype VII is the predominant genotype in China. However, the molecular evolution and phylodynamics of class II genotype VII NDV strains in China remained largely unknown. In this study, we identified 13 virulent NDV including 11 genotype VII strains and 2 genotype IX strains, from clinical samples during 1997 to 2019. Combined NDV sequences submitted to GenBank, we investigate evolution, and transmission dynamics of class II NDVs in China, especially genotype VII strains. Our results revealed that East and South China have the most genotypic diversity of class II NDV, and East China might be the origin of genotype VII NDVs in China. In addition, genotype VII NDVs in China are presumably transmitted by chickens, as the virus was most prevalent in chickens. Furthermore, codon usage analysis revealed that the F genes of genotype VII NDVs have stronger adaptation in chickens, and six amino acids in this gene are found under positive selection via selection model analysis. Collectively, our results revealed the genetic diversity and evolutionary dynamics of genotype VII NDVs in China, providing important insights into the epidemiology of these viruses in China.

Indexed as

Bayesian analysiscodon usage analysisevolutiongenotype VIINewcastle disease virustransmission

Identifiers

PMID33066232
PMCPMC7602024
OpenAlexW3093237922

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.