Evidence map›Paper›PMID 33066070›Full record

ArticleInternational journal of molecular sciences2020

A Novel HPLC-Based Method to Investigate on RNA after Fixation.

Paolo Fattorini, Cristina Forzato, Domenico Tierno, Eleonora De Martino, Eros Azzalini, Vincenzo Canzonieri, Giorgio Stanta, Serena Bonin

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed, 1 pooled it
0.3field-weighted citation impact, top 45% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 1 synthesis or guideline pooled it, 4 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Evaluation of a Set of miRNAs in 26 Cases of Fatal Traumatic Brain Injuries.International journal of molecular sciences · 2023
    Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Paolo FattoriniDSM-Department of Medical Sciences, University of Trieste, 34149 Trieste, Italy.ORCID 0000-0002-3416-1684
Cristina ForzatoDepartment of Chemical and Pharmaceutical Sciences, University of Trieste, 34127 Trieste, Italy.ORCID 0000-0003-4213-9089
Domenico TiernoDSM-Department of Medical Sciences, University of Trieste, 34149 Trieste, Italy.
Eleonora De MartinoDSM-Department of Medical Sciences, University of Trieste, 34149 Trieste, Italy.ORCID 0000-0003-0733-7231
Eros AzzaliniDSM-Department of Medical Sciences, University of Trieste, 34149 Trieste, Italy.
Vincenzo CanzonieriDSM-Department of Medical Sciences, University of Trieste, 34149 Trieste, Italy.ORCID 0000-0001-6010-0976
Giorgio StantaDSM-Department of Medical Sciences, University of Trieste, 34149 Trieste, Italy.
Serena BoninDSM-Department of Medical Sciences, University of Trieste, 34149 Trieste, Italy.ORCID 0000-0002-7349-0296
University of Trieste · IT

Funding

H2020 European Institute of Innovation and Technology European Union's Horizon 2020 research and innovation program under grant agreement No 733112Ministero dell'Istruzione, dell'Università e della Ricerca MIUR PRIN 2015. Protocol number 2015HAJH8E_002
6 · The paper itself

Abstract

RNA isolated from fixed and paraffin-embedded tissues is widely used in biomedical research and molecular pathology for diagnosis. In the present study, we have set-up a method based on high performance liquid chromatography (HPLC) to investigate the effects of different fixatives on RNA. By the application of the presented method, which is based on the Nuclease S1 enzymatic digestion of RNA extracts followed by a HPLC analysis, it is possible to quantify the unmodified nucleotide monophosphates (NMPs) in the mixture and recognize their hydroxymethyl derivatives as well as other un-canonical RNA moieties. The results obtained from a set of mouse livers fixed/embedded with different protocols as well from a set of clinical samples aged 0 to 30 years-old show that alcohol-based fixatives do not induce chemical modification of the nucleic acid under ISO standard recommendations and confirm that pre-analytical conditions play a major role in RNA preservation.

Indexed as

AnimalsChromatography, LiquidFixativesLiverMiceRNATissue EmbeddingTissue FixationFixativesRNAdegradationfixationhm-NMPHPLCISO standardsmodificationnuclease digestionnucleotide-monophosphateRNA

Identifiers

PMID33066070
PMCPMC7588918
OpenAlexW3092773835

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.