Evidence map›Paper›PMID 33064719›Full record

ArticlePloS one2020

Transcriptome data reveal conserved patterns of fruiting body development and response to heat stress in the mushroom-forming fungus Flammulina filiformis.

Xiao-Bin Liu, En-Hua Xia, Meng Li, Yang-Yang Cui, Pan-Meng Wang, Jin-Xia Zhang, Bao-Gui Xie, Jian-Ping Xu, Jun-Jie Yan, Jing Li and 2 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
5.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 53 citations in OpenAlex.

  1. Breeding of Early Maturity, High-QualityJournal of fungi (Basel, Switzerland) · 2026
    Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Whole-Genome Sequencing ofJournal of fungi (Basel, Switzerland) · 2025
    Article
  8. Review
  9. Transcriptome analysis reveals key genes and pathways associated with heat stress in Pleurotus pulmonarius.International microbiology : the official journal of the Spanish Society for Microbiology · 2025
    Article
  10. Article
  11. Phylogeny and Taxonomy of theJournal of fungi (Basel, Switzerland) · 2024
    Article
  12. Article
  13. Article
  14. Effect ofFoods (Basel, Switzerland) · 2024
    Article
  15. Advancements in genetic studies of mushrooms: a comprehensive review.World journal of microbiology & biotechnology · 2024
    Review
  16. Article
  17. Article
  18. Unravelling the Transcriptional Response ofInternational journal of molecular sciences · 2024
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 7 institutions in 3 countries.

Xiao-Bin LiuCAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan, China.ORCID 0000-0001-7091-2660
En-Hua XiaState Key Laboratory of Tea Plant Biology and Utilization, Anhui Agricultural University, Hefei, Anhui, China.
Meng LiYunnan Tobacco Science Research Institute, Kunming, China.
Yang-Yang CuiCAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan, China.
Pan-Meng WangCAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan, China.
Jin-Xia ZhangInstitute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, China.
Bao-Gui XieMycological Research Center, College of Life Sciences, Fujian Agriculture and Forestry University, Fuzhou, China.
Jian-Ping XuDepartment of Biology, McMaster University, Hamilton, Ontario, Canada.
Jun-Jie YanMycological Research Center, College of Life Sciences, Fujian Agriculture and Forestry University, Fuzhou, China.
Jing LiCAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan, China.
László G NagySynthetic and Systems Biology Unit, Institute of Biochemistry, Biological Research Centre, Szeged, Szeged, Hungary.
Zhu L YangCAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan, China.
Kunming Institute of Botany · CNFujian Agriculture and Forestry University · CNAnhui Agricultural University · CNHUN-REN Szegedi Biológiai Kutatóközpont · HUInstitute of Agricultural Resources and Regional Planning · CNMcMaster University · CATobacco Research Institute · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mushroom-forming fungi are complex multicellular organisms that form the basis of a large industry, yet, our understanding of the mechanisms of mushroom development and its responses to various stresses remains limited. The winter mushroom (Flammulina filiformis) is cultivated at a large commercial scale in East Asia and is a species with a preference for low temperatures. This study investigated fruiting body development in F. filiformis by comparing transcriptomes of 4 developmental stages, and compared the developmental genes to a 200-genome dataset to identify conserved genes involved in fruiting body development, and examined the response of heat sensitive and -resistant strains to heat stress. Our data revealed widely conserved genes involved in primordium development of F. filiformis, many of which originated before the emergence of the Agaricomycetes, indicating co-option for complex multicellularity during evolution. We also revealed several notable fruiting-specific genes, including the genes with conserved stipe-specific expression patterns and the others which related to sexual development, water absorption, basidium formation and sporulation, among others. Comparative analysis revealed that heat stress induced more genes in the heat resistant strain (M1) than in the heat sensitive one (XR). Of particular importance are the hsp70, hsp90 and fes1 genes, which may facilitate the adjustment to heat stress in the early stages of fruiting body development. These data highlighted novel genes involved in complex multicellular development in fungi and aid further studies on gene function and efforts to improve the productivity and heat tolerance in mushroom-forming fungi.

Indexed as

Evolution, MolecularHeat-Shock ResponseTranscriptomeAgaricalesConserved SequenceFruiting Bodies, FungalFungal ProteinsHeat-Shock ProteinsFungal ProteinsHeat-Shock Proteins

Identifiers

PMID33064719
PMCPMC7567395
OpenAlexW3092747035

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.