Evidence map›Paper›PMID 33064571›Full record

ArticleAnnual review of biophysics2021

Review of COVID-19 Antibody Therapies.

Jiahui Chen, Kaifu Gao, Rui Wang, Duc Duy Nguyen, Guo-Wei Wei

Abstract read
In one paragraph

Article in Annual review of biophysics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed.

  1. Review
  2. Article
  3. AI-based IsAb2.0 for antibody design.Briefings in bioinformatics · 2024
    Article
  4. Review
  5. Review
  6. Review
  7. Review
  8. Article
  9. Article
  10. Article
  11. Review
  12. Review
  13. Article
  14. Review
  15. Review
  16. Review
  17. Article
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  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors.

Jiahui ChenDepartment of Mathematics, Michigan State University, East Lansing, Michigan 48824, USA; email: wei@math.msu.edu.
Kaifu GaoDepartment of Mathematics, Michigan State University, East Lansing, Michigan 48824, USA; email: wei@math.msu.edu.
Rui WangDepartment of Mathematics, Michigan State University, East Lansing, Michigan 48824, USA; email: wei@math.msu.edu.
Duc Duy NguyenDepartment of Mathematics, University of Kentucky, Lexington, Kentucky 40506, USA.
Guo-Wei WeiDepartment of Mathematics, Michigan State University, East Lansing, Michigan 48824, USA; email: wei@math.msu.edu.

Funding

Synergistic integration of topology and machine learning for the predictions of protein-ligand binding affinities and mutation impactsR01GM126189 · NIGMS · MICHIGAN STATE UNIVERSITY · PI WEI, GUOWEI · 2018 to 2021
$1.4M
NIGMS NIH HHS R01 GM126189
6 · The paper itself

Abstract

In the global health emergency caused by coronavirus disease 2019 (COVID-19), efficient and specific therapies are urgently needed. Compared with traditional small-molecular drugs, antibody therapies are relatively easy to develop; they are as specific as vaccines in targeting severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); and they have thus attracted much attention in the past few months. This article reviews seven existing antibodies for neutralizing SARS-CoV-2 with 3D structures deposited in the Protein Data Bank (PDB). Five 3D antibody structures associated with the SARS-CoV spike (S) protein are also evaluated for their potential in neutralizing SARS-CoV-2. The interactions of these antibodies with the S protein receptor-binding domain (RBD) are compared with those between angiotensin-converting enzyme 2 and RBD complexes. Due to the orders of magnitude in the discrepancies of experimental binding affinities, we introduce topological data analysis, a variety of network models, and deep learning to analyze the binding strength and therapeutic potential of the 14 antibody-antigen complexes. The current COVID-19 antibody clinical trials, which are not limited to the S protein target, are also reviewed.

Indexed as

Antibodies, ViralCOVID-19HumansModels, MolecularSARS-CoV-2Antibodies, Viralantibody therapybinding affinityCOVID-19deep learningnetwork analysispersistent homologySARS-CoV-2

Identifiers

PMID33064571
PMCPMC8155790

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.