Evidence map›Paper›PMID 33060660›Full record

ArticleScientific reports2020

Genome targeting by hybrid Flp-TAL recombinases.

Eugenia Voziyanova, Feng Li, Riddhi Shah, Yuri Voziyanov

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.6field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Genome Analysis of an Enterococcal Prophage, Entfac.MY.Avicenna journal of medical biotechnology
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Eugenia VoziyanovaSchool of Biological Sciences, Louisiana Tech University, 1 Adams Blvd., Ruston, LA, 71272, USA.
Feng LiSchool of Biological Sciences, Louisiana Tech University, 1 Adams Blvd., Ruston, LA, 71272, USA.
Riddhi ShahDepartment of Medicine, Columbia University Medical Center, New York, NY, 10032, USA.
Yuri VoziyanovSchool of Biological Sciences, Louisiana Tech University, 1 Adams Blvd., Ruston, LA, 71272, USA. voziyan@latech.edu.
Louisiana Tech University · USColumbia University Irving Medical Center · US

Funding

Tailor-made variants of site-specific recombinases as tools for genome engineerinR01GM085848 · NIGMS · LOUISIANA TECH UNIVERSITY · PI VOZIYANOV, YURI · 2008 to 2012
$1.2M
NIGMS NIH HHS R01 GM085848NIH HHS R01GM085848
6 · The paper itself

Abstract

Genome engineering is a rapidly evolving field that benefits from the availability of different tools that can be used to perform genome manipulation tasks. We describe here the development of the Flp-TAL recombinases that can target genomic FRT-like sequences in their native chromosomal locations. Flp-TAL recombinases are hybrid enzymes that are composed of two functional modules: a variant of site-specific tyrosine recombinase Flp, which can have either narrow or broad target specificity, and the DNA-binding domain of the transcription activator-like effector, TAL. In Flp-TAL, the TAL module is responsible for delivering and stabilizing the Flp module onto the desired genomic FRT-like sequence where the Flp module mediates recombination. We demonstrate the functionality of the Flp-TAL recombinases by performing integration and deletion experiments in human HEK-293 cells. In the integration experiments we targeted a vector to three genomic FRT-like sequences located in the β-globin locus. In the deletion experiments we excised ~ 15 kilobases of DNA that contained a fragment of the integrated vector sequence and the neighboring genome sequence. On average, the efficiency of the integration and deletion reactions was about 0.1% and 20%, respectively.

Indexed as

beta-GlobinsCatalysisDNADNA NucleotidyltransferasesEscherichia coliGene DeletionGene LibraryGenetic EngineeringGenetic TherapyGenomicsHEK293 CellsHumansMutationPolymerase Chain ReactionRecombinasesRecombination, Geneticbeta-GlobinsDNADNA NucleotidyltransferasesFLP recombinaseRecombinasesTyrosine

Identifiers

PMID33060660
PMCPMC7562724
OpenAlexW3093082591

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.