Evidence map›Paper›PMID 33060173›Full record

ArticleGenome research2020

Active retrotransposons help maintain pericentromeric heterochromatin required for faithful cell division.

Yajing Hao, Dongpeng Wang, Shuheng Wu, Xiao Li, Changwei Shao, Peng Zhang, Jia-Yu Chen, Do-Hwan Lim, Xiang-Dong Fu, Runsheng Chen and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Genome research, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 10 citations in OpenAlex.

  1. Review
  2. Exploring the Possibility of RNA in Diverse Biological Processes.International journal of molecular sciences · 2023
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 2 countries.

Yajing Hao *Key Laboratory of RNA Biology, Center for Big Data Research in Health, Institute of Biophysics, Chinese Academy of Sciences, 100101, China.ORCID 0000-0003-1384-4176
Dongpeng Wang *Key Laboratory of RNA Biology, Center for Big Data Research in Health, Institute of Biophysics, Chinese Academy of Sciences, 100101, China.
Shuheng WuKey Laboratory of RNA Biology, Center for Big Data Research in Health, Institute of Biophysics, Chinese Academy of Sciences, 100101, China.
Xiao LiDepartment of Cellular and Molecular Medicine, University of California, San Diego, La Jolla, California 92093-0651, USA.
Changwei ShaoDepartment of Cellular and Molecular Medicine, University of California, San Diego, La Jolla, California 92093-0651, USA.ORCID 0000-0002-4082-7200
Peng ZhangKey Laboratory of RNA Biology, Center for Big Data Research in Health, Institute of Biophysics, Chinese Academy of Sciences, 100101, China.
Jia-Yu ChenDepartment of Cellular and Molecular Medicine, University of California, San Diego, La Jolla, California 92093-0651, USA.ORCID 0000-0001-9449-9321
Do-Hwan LimDepartment of Cellular and Molecular Medicine, University of California, San Diego, La Jolla, California 92093-0651, USA.ORCID 0000-0002-2054-1416
Xiang-Dong FuDepartment of Cellular and Molecular Medicine, University of California, San Diego, La Jolla, California 92093-0651, USA.ORCID 0000-0001-5499-8732
Runsheng ChenKey Laboratory of RNA Biology, Center for Big Data Research in Health, Institute of Biophysics, Chinese Academy of Sciences, 100101, China.ORCID 0000-0001-6049-8347
Shunmin HeKey Laboratory of RNA Biology, Center for Big Data Research in Health, Institute of Biophysics, Chinese Academy of Sciences, 100101, China.ORCID 0000-0002-7294-0865
Chinese Academy of Sciences · CNUniversity of California San Diego · US

Funding

Functional RNA elements in the human genomeR01HG004659 · NHGRI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Kevin Daniel Corbett, Eugene Wei-Ming Yeo · 2008 to 2026
$12.4M
Regulation of RNA metabolism and cell growth control by SR protein kinasesR01GM052872 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI DOWDY, STEVEN F · 1996 to 2019
$5.4M
NHGRI NIH HHS R01 HG004659NIGMS NIH HHS R01 GM052872
6 · The paper itself

Abstract

Retrotransposons are populated in vertebrate genomes, and when active, are thought to cause genome instability with potential benefit to genome evolution. Retrotransposon-derived RNAs are also known to give rise to small endo-siRNAs to help maintain heterochromatin at their sites of transcription; however, as not all heterochromatic regions are equally active in transcription, it remains unclear how heterochromatin is maintained across the genome. Here, we address these problems by defining the origins of repeat-derived RNAs and their specific chromatin locations in

Indexed as

HeterochromatinRetroelementsAnimalsCell DivisionCentromereChromosome SegregationDrosophilaDrosophila ProteinsEuchromatinHigh-Throughput Nucleotide SequencingRibonuclease IIIRNA HelicasesRNA, Small InterferingDCR-2 protein, DrosophilaDrosophila ProteinsEuchromatinHeterochromatinRetroelementsRibonuclease IIIRNA HelicasesRNA, Small Interfering

Identifiers

PMID33060173
PMCPMC7605247
OpenAlexW3092968976

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.