Evidence map›Paper›PMID 33060136›Full record

ArticleGenes & development2020

The transcription factor EGR2 is the molecular linchpin connecting STAT6 activation to the late, stable epigenomic program of alternative macrophage polarization.

Bence Daniel, Zsolt Czimmerer, Laszlo Halasz, Pal Boto, Zsuzsanna Kolostyak, Szilard Poliska, Wilhelm K Berger, Petros Tzerpos, Gergely Nagy, Attila Horvath and 8 more

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 59 citations in OpenAlex.

  1. Article
  2. Transcriptional regulation and function of GPR18 in macrophage subtype specification.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  3. Review
  4. Regulation of immune signal integration and memory by inflammation-induced chromosome conformation.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  5. Article
  6. Article
  7. Review
  8. Article
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  12. Article
  13. Egr2 drives the differentiation of Ly6CCommunications biology · 2024
    Article
  14. Article
  15. Article
  16. Article
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  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

18 authors at 6 institutions in 4 countries.

Bence Daniel *Department of Medicine, Johns Hopkins University School of Medicine, St. Petersburg, Florida 33701, USA.
Zsolt Czimmerer *Department of Biochemistry and Molecular Biology, Faculty of Medicine, University of Debrecen, Debrecen 4032, Hungary.
Laszlo Halasz *Department of Medicine, Johns Hopkins University School of Medicine, St. Petersburg, Florida 33701, USA.
Pal BotoDepartment of Biochemistry and Molecular Biology, Faculty of Medicine, University of Debrecen, Debrecen 4032, Hungary.
Zsuzsanna KolostyakDepartment of Biochemistry and Molecular Biology, Faculty of Medicine, University of Debrecen, Debrecen 4032, Hungary.
Szilard PoliskaDepartment of Biochemistry and Molecular Biology, Faculty of Medicine, University of Debrecen, Debrecen 4032, Hungary.
Wilhelm K BergerDepartment of Medicine, Johns Hopkins University School of Medicine, St. Petersburg, Florida 33701, USA.
Petros TzerposDepartment of Biochemistry and Molecular Biology, Faculty of Medicine, University of Debrecen, Debrecen 4032, Hungary.
Gergely NagyDepartment of Biochemistry and Molecular Biology, Faculty of Medicine, University of Debrecen, Debrecen 4032, Hungary.
Attila HorvathDepartment of Biochemistry and Molecular Biology, Faculty of Medicine, University of Debrecen, Debrecen 4032, Hungary.
György HajasDepartment of Immunology, Faculty of Medicine, University of Debrecen, Debrecen 4032, Hungary.
Timea CsehDepartment of Biochemistry and Molecular Biology, Faculty of Medicine, University of Debrecen, Debrecen 4032, Hungary.
Aniko NagyDepartment of Biochemistry and Molecular Biology, Faculty of Medicine, University of Debrecen, Debrecen 4032, Hungary.
Sascha SauerOtto Warburg Laboratory, Max Planck Institute for Molecular Genetics, Berlin 14195, Germany.
Jean Francois-DeleuzeCentre National de Génotypage, Institut de Génomique, Commissariat à l'Énergie Atomique, Evry 91000, France.
Istvan SzatmariDepartment of Biochemistry and Molecular Biology, Faculty of Medicine, University of Debrecen, Debrecen 4032, Hungary.
Attila BacsiDepartment of Immunology, Faculty of Medicine, University of Debrecen, Debrecen 4032, Hungary.
Laszlo NagyDepartment of Medicine, Johns Hopkins University School of Medicine, St. Petersburg, Florida 33701, USA.
University of Debrecen · HUJohns Hopkins All Children's Hospital · USCommissariat à l'Énergie Atomique et aux Énergies Alternatives · FRJohns Hopkins Medicine · USJohns Hopkins University · USUniversity of Würzburg · DE

Funding

PPARgamma as an architectural regulator of gene expression in endocrine signalingR01DK115924 · NIDDK · JOHNS HOPKINS UNIVERSITY · PI NAGY, LASZLO · 2018 to 2021
$1.6M
NIDDK NIH HHS R01 DK115924
6 · The paper itself

Abstract

Macrophages polarize into functionally distinct subtypes while responding to microenvironmental cues. The identity of proximal transcription factors (TFs) downstream from the polarization signals are known, but their activity is typically transient, failing to explain the long-term, stable epigenomic programs developed. Here, we mapped the early and late epigenomic changes of interleukin-4 (IL-4)-induced alternative macrophage polarization. We identified the TF, early growth response 2 (EGR2), bridging the early transient and late stable gene expression program of polarization. EGR2 is a direct target of IL-4-activated STAT6, having broad action indispensable for 77% of the induced gene signature of alternative polarization, including its autoregulation and a robust, downstream TF cascade involving PPARG. Mechanistically, EGR2 binding results in chromatin opening and the recruitment of chromatin remodelers and RNA polymerase II.

Indexed as

AnimalsCell PolarityChromosome MappingConserved SequenceEarly Growth Response Protein 2Enhancer Elements, GeneticEpigenesis, GeneticGene Expression RegulationGenomeHumansInterleukin-4MacrophagesMiceMice, Inbred C57BLProtein Interaction Domains and MotifsSTAT6 Transcription FactorEarly Growth Response Protein 2Egr2 protein, mouseInterleukin-4Stat6 protein, mouseSTAT6 Transcription FactorEGR2epigenomic regulationIL-4macrophage polarizationtranscription factor network

Identifiers

PMID33060136
PMCPMC7608752
OpenAlexW3093209165

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.