Evidence map›Paper›PMID 33059440›Full record

ArticleBiochemistry2020

The NBDY Microprotein Regulates Cellular RNA Decapping.

Zhenkun Na, Yang Luo, Jeremy A Schofield, Stephanie Smelyansky, Alexandra Khitun, Sowndarya Muthukumar, Eugene Valkov, Matthew D Simon, Sarah A Slavoff

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 43 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Review
  5. Chasing the Ghost Proteome in the Dark Matter.Molecular & cellular proteomics : MCP · 2025
    Review
  6. Article
  7. Article
  8. Eukaryotic Microproteins.Annual review of biochemistry · 2025
    Review
  9. Article
  10. Article
  11. Noncanonical microprotein regulation of immunity.Molecular therapy : the journal of the American Society of Gene Therapy · 2024
    Review
  12. Article
  13. Review
  14. Review
  15. Article
  16. Article
  17. Article
  18. Review
  19. Small Open Reading Frame-Encoded Micro-Peptides: An Emerging Protein World.International journal of molecular sciences · 2023
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Zhenkun NaDepartment of Chemistry, Yale University, New Haven, Connecticut 06520, United States.
Yang LuoDepartment of Chemistry, Yale University, New Haven, Connecticut 06520, United States.ORCID 0000-0002-8709-0103
Jeremy A SchofieldChemical Biology Institute, Yale University, West Haven, Connecticut 06516, United States.
Stephanie SmelyanskyDepartment of Chemistry, Yale University, New Haven, Connecticut 06520, United States.
Alexandra KhitunDepartment of Chemistry, Yale University, New Haven, Connecticut 06520, United States.
Sowndarya MuthukumarCenter for Cancer Research, National Cancer Institute, Frederick, Maryland 21702, United States.
Eugene ValkovCenter for Cancer Research, National Cancer Institute, Frederick, Maryland 21702, United States.
Matthew D SimonChemical Biology Institute, Yale University, West Haven, Connecticut 06516, United States.ORCID 0000-0001-7423-5265
Sarah A SlavoffDepartment of Chemistry, Yale University, New Haven, Connecticut 06520, United States.ORCID 0000-0002-4443-2070
Yale University · USNational Cancer Institute · US

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
Skill Development for Diverse Scientific Careers: A New Course Predoctoral Program in Cellular and Molecular BiologyT32GM007223 · NIGMS · YALE UNIVERSITY · PI BASERGA, SUSAN J · 1985 to 2019
$31.0M
Predoc Training at the Interface Chemistry and BiologyT32GM067543 · NIGMS · YALE UNIVERSITY · PI CRAWFORD, JASON MICHAEL · 2003 to 2022
$7.4M
Integrating RNAs into signaling pathways by engineering covalent RNA modificationDP2HD083992 · NICHD · YALE UNIVERSITY · PI SIMON, MATTHEW DAVID · 2014 to 2014
$2.5M
Structural and functional roles of the microprotein NoBody in mRNA decapping and decayR01GM122984 · NIGMS · YALE UNIVERSITY · PI SLAVOFF, SARAH ANN · 2017 to 2021
$1.6M
NCATS NIH HHS UL1 TR001863NICHD NIH HHS DP2 HD083992NIGMS NIH HHS R01 GM122984NIGMS NIH HHS T32 GM007223NIGMS NIH HHS T32 GM067543
6 · The paper itself

Abstract

Proteogenomic identification of translated small open reading frames in humans has revealed thousands of microproteins, or polypeptides of fewer than 100 amino acids, that were previously invisible to geneticists. Hundreds of microproteins have been shown to be essential for cell growth and proliferation, and many regulate macromolecular complexes. One such regulatory microprotein is NBDY, a 68-amino acid component of the human cytoplasmic RNA decapping complex. Heterologously expressed NBDY was previously reported to regulate cytoplasmic ribonucleoprotein granules known as P-bodies and reporter gene stability, but the global effect of endogenous NBDY on the cellular transcriptome remained undefined. In this work, we demonstrate that endogenous NBDY directly interacts with the human RNA decapping complex through EDC4 and DCP1A and localizes to P-bodies. Global profiling of RNA stability changes in

Indexed as

HEK293 CellsHumansNonsense Mediated mRNA DecayOpen Reading FramesRNA CapsRNA, MessengerRNA StabilityRNA CapsRNA, Messenger

Identifiers

PMID33059440
PMCPMC7682656
OpenAlexW3092796616

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.