Evidence map›Paper›PMID 33058797›Full record

ArticleThe Lancet. Infectious diseases2021

Genomic evidence for reinfection with SARS-CoV-2: a case study.

Richard L Tillett, Joel R Sevinsky, Paul D Hartley, Heather Kerwin, Natalie Crawford, Andrew Gorzalski, Chris Laverdure, Subhash C Verma, Cyprian C Rossetto, David Jackson and 3 more

Abstract readCase Reports
In one paragraph

Article in The Lancet. Infectious diseases, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 473 papers, 8 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
473citing papers in PubMed, 8 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

473 citing papers in PubMed, 8 syntheses or guidelines pooled it.

  1. Pooled it
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  6. Reinfection in patients with COVID-19: a systematic review.Global health research and policy · 2022
    Pooled it
  7. Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Sequence Characteristics of Coronavirus Disease 2019 (COVID-19) Persistence and Reinfection.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2022
    Pooled it
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  15. Final-Size Solutions for SIRI Models with Vaccination.Bulletin of mathematical biology · 2026
    Article
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413 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors.

Richard L TillettNevada Institute of Personalized Medicine, University of Nevada, Las Vegas, NV, USA; University of Nevada, Reno Center for Bioinformatics, Reno, NV, USA.
Joel R SevinskyTheiagen Consulting LLC, Highlands Ranch, CO, USA.
Paul D HartleyNevada Genomics Center, University of Nevada, Reno, NV, USA.
Heather KerwinDivision of Epidemiology & Public Health Preparedness, Washoe County Health District, Reno, NV, USA.
Natalie CrawfordRenown Health, Reno, NV, USA.
Andrew GorzalskiNevada State Public Health Laboratory, Reno, NV, USA.
Chris LaverdureNevada State Public Health Laboratory, Reno, NV, USA.
Subhash C VermaDepartment of Microbiology and Immunology, University of Nevada, Reno School of Medicine, Reno, NV, USA.
Cyprian C RossettoDepartment of Microbiology and Immunology, University of Nevada, Reno School of Medicine, Reno, NV, USA.
David JacksonForensic Science Division, Washoe County Sheriff's Office, Reno, NV, USA.
Megan J FarrellForensic Science Division, Washoe County Sheriff's Office, Reno, NV, USA.
Stephanie Van HooserNevada State Public Health Laboratory, Reno, NV, USA.
Mark PandoriNevada State Public Health Laboratory, Reno, NV, USA; Department of Pathology and Laboratory Medicine, University of Nevada, Reno School of Medicine, Reno, NV, USA. Electronic address: mpandori@med.unr.edu.

Funding

Outreach/Diversity/Pipeline ProjectP20GM103440 · NIGMS · UNIVERSITY OF NEVADA RENO · PI Eduardo A Robleto · 2012 to 2026
$58.0M
Tracking and EvaluationU54GM104944 · NIGMS · UNIVERSITY OF NEVADA LAS VEGAS · PI KUMAR, PARVESH · 2013 to 2023
$39.6M
NIGMS NIH HHS P20 GM103440NIGMS NIH HHS U54 GM104944
6 · The paper itself

Abstract

backgroundThe degree of protective immunity conferred by infection with severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is currently unknown. As such, the possibility of reinfection with SARS-CoV-2 is not well understood. We describe an investigation of two instances of SARS-CoV-2 infection in the same individual.

methodsA 25-year-old man who was a resident of Washoe County in the US state of Nevada presented to health authorities on two occasions with symptoms of viral infection, once at a community testing event in April, 2020, and a second time to primary care then hospital at the end of May and beginning of June, 2020. Nasopharyngeal swabs were obtained from the patient at each presentation and twice during follow-up. Nucleic acid amplification testing was done to confirm SARS-CoV-2 infection. We did next-generation sequencing of SARS-CoV-2 extracted from nasopharyngeal swabs. Sequence data were assessed by two different bioinformatic methodologies. A short tandem repeat marker was used for fragment analysis to confirm that samples from both infections came from the same individual.

findingsThe patient had two positive tests for SARS-CoV-2, the first on April 18, 2020, and the second on June 5, 2020, separated by two negative tests done during follow-up in May, 2020. Genomic analysis of SARS-CoV-2 showed genetically significant differences between each variant associated with each instance of infection. The second infection was symptomatically more severe than the first.

interpretationGenetic discordance of the two SARS-CoV-2 specimens was greater than could be accounted for by short-term in vivo evolution. These findings suggest that the patient was infected by SARS-CoV-2 on two separate occasions by a genetically distinct virus. Thus, previous exposure to SARS-CoV-2 might not guarantee total immunity in all cases. All individuals, whether previously diagnosed with COVID-19 or not, should take identical precautions to avoid infection with SARS-CoV-2. The implications of reinfections could be relevant for vaccine development and application.

fundingNevada IDEA Network of Biomedical Research, and the National Institute of General Medical Sciences (National Institutes of Health).

Indexed as

AdultCOVID-19Genome, ViralHumansMalePhylogenyReinfectionSARS-CoV-2

Identifiers

PMID33058797
PMCPMC7550103

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.