Evidence map›Paper›PMID 33058778›Full record

ArticleMolecular cell2020

Cancer-Associated Gain-of-Function Mutations Activate a SWI/SNF-Family Regulatory Hub.

Cedric R Clapier, Naveen Verma, Timothy J Parnell, Bradley R Cairns

Open access · hybridAbstract read
In one paragraph

Article in Molecular cell, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. ISWI catalyzes nucleosome sliding in condensed nucleosome arrays.Nature structural & molecular biology · 2024
    Article
  9. Review
  10. Review
  11. ISWI catalyzes nucleosome sliding in condensed nucleosome arrays.bioRxiv : the preprint server for biology · 2023
    Article
  12. Article
  13. Article
  14. (mis)-Targeting of SWI/SNF complex(es) in cancer.Cancer metastasis reviews · 2023
    Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Cancer discovery · 2022
    Article
  20. Journal of Cancer · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Cedric R ClapierDepartment of Oncological Sciences and Howard Hughes Medical Institute, University of Utah School of Medicine, Salt Lake City, UT 84112, USA; Huntsman Cancer Institute, University of Utah School of Medicine, Salt Lake City, UT 84112, USA. Electronic address: cedric.clapier@hci.utah.edu.
Naveen VermaDepartment of Oncological Sciences and Howard Hughes Medical Institute, University of Utah School of Medicine, Salt Lake City, UT 84112, USA; Huntsman Cancer Institute, University of Utah School of Medicine, Salt Lake City, UT 84112, USA.
Timothy J ParnellHuntsman Cancer Institute, University of Utah School of Medicine, Salt Lake City, UT 84112, USA.
Bradley R CairnsDepartment of Oncological Sciences and Howard Hughes Medical Institute, University of Utah School of Medicine, Salt Lake City, UT 84112, USA; Huntsman Cancer Institute, University of Utah School of Medicine, Salt Lake City, UT 84112, USA. Electronic address: brad.cairns@hci.utah.edu.
University of Utah · USHoward Hughes Medical Institute · USHuntsman Cancer Institute · US

Funding

Targeting SS18-SSX biology in synovial sarcomagenesisU54CA231652 · NCI · UNIVERSITY OF UTAH · PI JONES, KEVIN BRUCE · 2018 to 2022
$12.0M
Epigenetic Mechanisms Driving Synovial SarcomagenesisR01CA201396 · NCI · UNIVERSITY OF UTAH · PI CAIRNS, BRADLEY R., JONES, KEVIN BRUCE · 2017 to 2021
$1.7M
Howard Hughes Medical InstituteNCI NIH HHS R01 CA201396NCI NIH HHS U54 CA231652
6 · The paper itself

Abstract

SWI/SNF-family remodelers (BAF/PBAF in mammals) are essential chromatin regulators, and mutations in human BAF/PBAF components are associated with ∼20% of cancers. Cancer-associated missense mutations in human BRG1 (encoding the catalytic ATPase) have been characterized previously as conferring loss-of-function. Here, we show that cancer-associated missense mutations in BRG1, when placed into the orthologous Sth1 ATPase of the yeast RSC remodeler, separate into two categories: loss-of-function enzymes, or instead, gain-of-function enzymes that greatly improve DNA translocation efficiency and nucleosome remodeling in vitro. Our work identifies a structural "hub," formed by the association of several Sth1 domains, that regulates ATPase activity and DNA translocation efficiency. Remarkably, all gain-of-function cancer-associated mutations and all loss-of-function mutations physically localize to distinct adjacent regions in the hub, which specifically regulate and implement DNA translocation, respectively. In vivo, only gain-of-function cancer-associated mutations conferred precocious chromatin accessibility. Taken together, we provide a structure-function mechanistic basis for cancer-associated hyperactivity.

Indexed as

Chromatin Assembly and DisassemblyGain of Function MutationCell Cycle ProteinsChromosomal Proteins, Non-HistoneDNA-Binding ProteinsDNA HelicasesHumansNeoplasmsNuclear ProteinsNucleosomesSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTranscription FactorsTranslocation, GeneticCell Cycle ProteinsChromosomal Proteins, Non-HistoneDNA-Binding ProteinsDNA HelicasesNuclear ProteinsNucleosomesRSC complex, S cerevisiaeSaccharomyces cerevisiae ProteinsSMARCA4 protein, humanSTH1 protein, S cerevisiaeTranscription FactorsBAFBRG1cancerchromatin remodelingDNA accessibilitynucleosomeRSCSTH1SWI/SNF

Identifiers

PMID33058778
PMCPMC7853424
OpenAlexW3093101538

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.