Evidence map›Paper›PMID 33057674›Full record

ArticleSystematic biology2021

Mind the Outgroup and Bare Branches in Total-Evidence Dating: a Case Study of Pimpliform Darwin Wasps (Hymenoptera, Ichneumonidae).

Tamara Spasojevic, Gavin R Broad, Ilari E Sääksjärvi, Martin Schwarz, Masato Ito, Stanislav Korenko, Seraina Klopfstein

Abstract read
In one paragraph

Article in Systematic biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. The genome sequence of an ichneumonid wasp,Wellcome open research · 2024
    Article
  6. Article
  7. Article
  8. The genome sequence of an ichneumonid wasp,Wellcome open research · 2023
    Article
  9. Article
  10. The genome sequence of an ichneumon wasp,Wellcome open research · 2023
    Article
  11. Article
  12. Article
  13. Article
4 · The record

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5 · Who and what money

Authors and funding

7 authors.

Tamara SpasojevicAbteilung Wirbellose Tiere Invertebrates, Naturhistorisches Museum der Burgergemeinde Bern, Bernastrasse 15, 3005 Bern, Switzerland.
Gavin R BroadDepartment of Life Sciences, Natural History Museum, London SW7 5BD, UK.
Ilari E SääksjärviBiodiversity Unit, University of Turku, Turku, Finland.
Martin SchwarzEben 21, A-4202 Kirchschlag, Austria.
Masato ItoGraduate School of Agricultural Science, Department of Agrobioscience, Kobe University, 657-8501 Japan.
Stanislav KorenkoDepartment of Agroecology and Crop Production, Faculty of Agrobiology, Food and Natural Resources, Czech University of Life Sciences Prague, 165 21 Prague 6, Suchdol, Czech Republic.
Seraina KlopfsteinAbteilung Wirbellose Tiere Invertebrates, Naturhistorisches Museum der Burgergemeinde Bern, Bernastrasse 15, 3005 Bern, Switzerland.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Taxon sampling is a central aspect of phylogenetic study design, but it has received limited attention in the context of total-evidence dating, a widely used dating approach that directly integrates molecular and morphological information from extant and fossil taxa. We here assess the impact of commonly employed outgroup sampling schemes and missing morphological data in extant taxa on age estimates in a total-evidence dating analysis under the uniform tree prior. Our study group is Pimpliformes, a highly diverse, rapidly radiating group of parasitoid wasps of the family Ichneumonidae. We analyze a data set comprising 201 extant and 79 fossil taxa, including the oldest fossils of the family from the Early Cretaceous and the first unequivocal representatives of extant subfamilies from the mid-Paleogene. Based on newly compiled molecular data from ten nuclear genes and a morphological matrix that includes 222 characters, we show that age estimates become both older and less precise with the inclusion of more distant and more poorly sampled outgroups. These outgroups not only lack morphological and temporal information but also sit on long terminal branches and considerably increase the evolutionary rate heterogeneity. In addition, we discover an artifact that might be detrimental for total-evidence dating: "bare-branch attraction," namely high attachment probabilities of certain fossils to terminal branches for which morphological data are missing. Using computer simulations, we confirm the generality of this phenomenon and show that a large phylogenetic distance to any of the extant taxa, rather than just older age, increases the risk of a fossil being misplaced due to bare-branch attraction. After restricting outgroup sampling and adding morphological data for the previously attracting, bare branches, we recover a Jurassic origin for Pimpliformes and Ichneumonidae. This first age estimate for the group not only suggests an older origin than previously thought but also that diversification of the crown group happened well before the Cretaceous-Paleogene boundary. Our case study demonstrates that in order to obtain robust age estimates, total-evidence dating studies need to be based on a thorough and balanced sampling of both extant and fossil taxa, with the aim of minimizing evolutionary rate heterogeneity and missing morphological information. [Bare-branch attraction; ichneumonids; fossils; morphological matrix; phylogeny; RoguePlots.].

Indexed as

WaspsAnimalsBiological EvolutionComputer SimulationFossilsPhylogeny

Identifiers

PMID33057674
PMCPMC7875445

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