Evidence map›Paper›PMID 33057394›Full record

ArticlePloS one2020

Transcriptome sequencing and screening of genes related to sex determination of Trichosanthes kirilowii Maxim.

Xiuqin Hu, Zhenyang Liao, Bo Zhang, JingJing Yue, Zhen Wang, Xin Jie, Juan Liu

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
8.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 31 citations in OpenAlex.

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  7. ThePlants (Basel, Switzerland) · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Xiuqin HuLunan Engineering Technology Research Center for the Development of Traditional Chinese Medicine Resources of Shandong Province, School of Pharmacy, LinYi University, Shandong, China.
Zhenyang LiaoFAFU and UIUC-SIB Joint Center for Genomics and Biotechnology, Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology, Key Laboratory of Genetics, Breeding and Multiple Utilization of Corps, Ministry of Education, Fujian Agriculture and Forestry University, Fuzhou, Fujian, China.
Bo ZhangLunan Engineering Technology Research Center for the Development of Traditional Chinese Medicine Resources of Shandong Province, School of Pharmacy, LinYi University, Shandong, China.
JingJing YueFAFU and UIUC-SIB Joint Center for Genomics and Biotechnology, Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology, Key Laboratory of Genetics, Breeding and Multiple Utilization of Corps, Ministry of Education, Fujian Agriculture and Forestry University, Fuzhou, Fujian, China.
Zhen WangLunan Engineering Technology Research Center for the Development of Traditional Chinese Medicine Resources of Shandong Province, School of Pharmacy, LinYi University, Shandong, China.
Xin JieLunan Engineering Technology Research Center for the Development of Traditional Chinese Medicine Resources of Shandong Province, School of Pharmacy, LinYi University, Shandong, China.ORCID 0000-0002-8928-2432
Juan LiuKey Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, China.
Linyi University · CNFujian Agriculture and Forestry University · CNChinese Academy of Sciences · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Trichosanthes kirilowii Maxim. (TK) is a dioecious plant in the Cucurbitaceae for which different sexes have separate medicinal uses. In order to study the genes related to sex determination, transcriptome sequencing was performed on flower buds of male and female plants using the high-throughput sequencing technology. A total of 145,975 unigenes and 7110 DEGs were obtained. There were 6776 DEGs annotated to 1234 GO terms and enriched to 18 functional groups, including five biological processes related to sugar metabolism. KEGG pathway analysis indicated genes involved in hormone transduction, hormone synthesis and carbohydrate metabolism. Many DEGs of TK are involved in reproductive organ formation, hormone signal transduction and regulatory networks. Combining the results of GO, KEGG and qRT-PCR, 11 sex determining candidate genes of TK were selected, including MYB80, MYB108, CER1, CBL9, ABCB19, SERK1, HSP81-3, ACS9, SEP3, AUX1 and YUC6. The results provide a foundation for the study of sex differentiation in TK.

Indexed as

TranscriptomeCarbohydrate MetabolismGene Expression Regulation, PlantGene Regulatory NetworksHigh-Throughput Nucleotide SequencingMolecular Sequence AnnotationPlant Growth RegulatorsPlant ProteinsRNA, PlantSignal TransductionTrichosanthesPlant Growth RegulatorsPlant ProteinsRNA, Plant

Identifiers

PMID33057394
PMCPMC7561194
OpenAlexW3093359197

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.