Evidence map›Paper›PMID 33055250›Full record

ArticleJournal of virology2020

High-Resolution Mapping of Human Norovirus Antigens via Genomic Phage Display Library Selections and Deep Sequencing.

Wanzhi Huang, Victoria Soeung, David M Boragine, Liya Hu, B V Venkataram Prasad, Mary K Estes, Robert L Atmar, Timothy Palzkill

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.3field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Wanzhi HuangDepartment of Pharmacology and Chemical Biology, Baylor College of Medicine, Houston, Texas, USA.
Victoria SoeungDepartment of Pharmacology and Chemical Biology, Baylor College of Medicine, Houston, Texas, USA.
David M BoragineDepartment of Biochemistry and Molecular Biology, Baylor College of Medicine, Houston, Texas, USA.
Liya HuDepartment of Biochemistry and Molecular Biology, Baylor College of Medicine, Houston, Texas, USA.
B V Venkataram PrasadDepartment of Biochemistry and Molecular Biology, Baylor College of Medicine, Houston, Texas, USA.
Mary K EstesDepartment of Molecular Virology and Microbiology, Baylor College of Medicine, Houston, Texas, USA.
Robert L AtmarDepartment of Molecular Virology and Microbiology, Baylor College of Medicine, Houston, Texas, USA.
Timothy PalzkillDepartment of Pharmacology and Chemical Biology, Baylor College of Medicine, Houston, Texas, USA timothyp@bcm.edu.ORCID 0000-0002-5267-0001
Baylor College of Medicine · US

Funding

X-ray Crystallographic Studies on CalicivirusesP01AI057788 · NIAID · BAYLOR COLLEGE OF MEDICINE · PI PRASAD, BIDADI VENKATARAM · 2004 to 2024
$34.4M
HOUSTON AREA MOLECULAR BIOPHYSICS TRAINING PROGRAMT32GM008280 · NIGMS · RICE UNIVERSITY · PI WENSEL, THEODORE G · 1988 to 2023
$8.0M
NIAID NIH HHS P01 AI057788NIGMS NIH HHS T32 GM008280
6 · The paper itself

Abstract

Norovirus (NoV) infections are a leading cause of gastroenteritis. The humoral immune response plays an important role in the control of NoV, and recent studies have identified neutralizing antibodies that bind the capsid protein VP1 to block viral infection. Here, we utilize a NoV GI.1 Jun-Fos-assisted phage display library constructed from randomly fragmented genomic DNA coupled with affinity selection for antibody binding and subsequent deep sequencing to map epitopes. The epitopes were identified by quantitating the phage clones before and after affinity selection and aligning the sequences of the most enriched peptides. The HJT-R3-A9 single-chain variable fragment (scFv) antibody epitope was mapped to a 12-amino-acid region of VP1 that is also the binding site for several previously identified monoclonal antibodies. We synthesized the 12-mer peptide and found that it binds the scFv antibody with a

Indexed as

Amino Acid SequenceAnimalsAntibodies, MonoclonalAntibodies, ViralAntigens, ViralBacteriophagesBinding Sites, AntibodyCapsid ProteinsCell Surface Display TechniquesEpitope MappingEpitopesGenome, ViralGenomic LibraryHigh-Throughput Nucleotide SequencingHumansNorovirusAntibodies, MonoclonalAntibodies, ViralAntigens, ViralCapsid ProteinsEpitopesSingle-Chain Antibodiesantibodybacteriophage displayepitope mappingmonoclonal antibodiesnoroviruses

Identifiers

PMID33055250
PMCPMC7737742
OpenAlexW3093145503

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.