Evidence map›Paper›PMID 33052673›Full record

ArticleThe journal of physical chemistry. B2020

Direct Visualization of the Binding of Transforming Growth Factor Beta 1 with Cartilage Oligomeric Matrix Protein via High-Resolution Atomic Force Microscopy.

Victoria Tran, Arpad Karsai, Michael C Fong, Weiliang Cai, J Gabriel Fraley, Jasper H N Yik, Eric Klineberg, Dominik R Haudenschild, Gang-Yu Liu

Open access · greenAbstract read
In one paragraph

Article in The journal of physical chemistry. B, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.6field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Simulation toolkits at the molecular scale for trans-scale thermal signaling.Computational and structural biotechnology journal · 2023
    Review
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Victoria TranDepartment of Chemistry, University of California, Davis, California 95616, United States.
Arpad KarsaiDepartment of Chemistry, University of California, Davis, California 95616, United States.
Michael C FongDepartment of Biomedical Engineering, University of California, Davis, California 95616, United States.
Weiliang CaiDepartment of Orthopaedic Surgery, University of California-Davis Medical Center, Sacramento, California 95817, United States.
J Gabriel FraleyDepartment of Orthopaedic Surgery, University of California-Davis Medical Center, Sacramento, California 95817, United States.
Jasper H N YikDepartment of Orthopaedic Surgery, University of California-Davis Medical Center, Sacramento, California 95817, United States.
Eric KlinebergDepartment of Orthopaedic Surgery, University of California-Davis Medical Center, Sacramento, California 95817, United States.
Dominik R HaudenschildDepartment of Orthopaedic Surgery, University of California-Davis Medical Center, Sacramento, California 95817, United States.
Gang-Yu LiuDepartment of Chemistry, University of California, Davis, California 95616, United States.
University of California Davis Medical Center · USUniversity of California, Davis · US

Funding

Multivalent Presentation of Growth Factors Regulates Cellular ResponsesR01AR070239 · NIAMS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI HAUDENSCHILD, DOMINIK R · 2017 to 2021
$1.6M
NIAMS NIH HHS R01 AR070239
6 · The paper itself

Abstract

This work reports the first direct observations of binding and complex formation between transforming growth factor beta 1 (TGF-β1) and cartilage oligomeric matrix protein (COMP) using high-resolution atomic force microscopy (AFM). Each COMP molecule consists of pentamers whose five identical monomeric units bundle at N-termini. From this central point, the five monomers' flexible arms extend outward with C-terminal domains at the distal ends, forming a bouquet-like structure. In commonly used buffer solutions, TGF-β1 molecules typically form homodimers (majority), double dimers (minority), and aggregates (trace amount). Mixing TGF-β1 and COMP leads to rapid binding and complex formation. The TGF-β1/COMP complexes contain one to three COMP and multiple TGF-β1 molecules. For complexes with one COMP, the structure is more compact and less flexible than that of COMP alone. For complexes with two or more COMP molecules, the conformation varies to a large degree from one complex to another. This is attributed to the presence of double dimers or aggregates of TGF-β1 molecules, whose size and multiple binding sites enable binding to more than one COMP. The number and location of individual TGF-β1 dimers are also clearly visible in all complexes. This molecular-level information provides a new insight into the mechanism of chondrogenesis enhancement by TGF-β1/COMP complexes, i.e., simultaneous and multivalent presentation of growth factors. These presentations help explain the high efficacy in sustained activation of the signaling pathway to augment chondrogenesis.

Indexed as

Signal TransductionTransforming Growth Factor beta1Binding SitesCartilage Oligomeric Matrix ProteinMicroscopy, Atomic ForceCartilage Oligomeric Matrix ProteinTransforming Growth Factor beta1

Identifiers

PMID33052673
PMCPMC7891936
OpenAlexW3092774465

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.