Evidence map›Paper›PMID 33051802›Full record

ArticleJournal of medical toxicology : official journal of the American College of Medical Toxicology2021

The Genomics of Elevated ALT and Adducts in Therapeutic Acetaminophen Treatment: a Pilot Study.

Andrew A Monte, Brandon Sonn, Jessica Saben, Barry H Rumack, Kate M Reynolds, Richard C Dart, Kennon J Heard

Registry-linked trialOpen access · greenAbstract read
In one paragraph

Article in Journal of medical toxicology : official journal of the American College of Medical Toxicology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT04964310 (Pharmacogenomics of APAP Induced DILI in Chinese Population.), which is not on this map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.9field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT04964310 recruitingnot on this map

Pharmacogenomics of APAP Induced DILI in Chinese Population.

TypeobservationalSponsorThe First Affiliated Hospital with Nanjing Medical UniversityRan2020 to 2026Enrolled339ConditionsAcetaminophen, Drug-Induced Liver Injury, Pharmacogenetics, ChinaArmsgenetic polymorphism
3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
  3. It's Been a Long Journey: Do We Know Where We Are Going?Journal of medical toxicology : official journal of the American College of Medical Toxicology · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Andrew A MonteDepartment of Emergency Medicine, University of Colorado School of Medicine, Aurora, CO, USA. Andrew.monte@cuanschutz.edu.
Brandon SonnDepartment of Emergency Medicine, University of Colorado School of Medicine, Aurora, CO, USA.
Jessica SabenDepartment of Emergency Medicine, University of Colorado School of Medicine, Aurora, CO, USA.
Barry H RumackDepartment of Emergency Medicine, University of Colorado School of Medicine, Aurora, CO, USA.
Kate M ReynoldsRocky Mountain Poison & Drug Center, Denver Health and Hospital Authority, Denver, CO, USA.
Richard C DartRocky Mountain Poison & Drug Center, Denver Health and Hospital Authority, Denver, CO, USA.
Kennon J HeardDepartment of Emergency Medicine, University of Colorado School of Medicine, Aurora, CO, USA.
University of Colorado Denver · USHealth and Hospital Corporation · USDenver Health Medical Center · USUniversity of Colorado Anschutz Medical Campus · US

Funding

Colorado Clinical and Translational Sciences InstituteUL1TR001082 · NCATS · UNIVERSITY OF COLORADO DENVER · PI SOKOL, RONALD J. · 2013 to 2017
$48.0M
PERSONALIZING EMERGENCY/ACUTE THERAPEUTICS UTILIZING SYSTEMS BIOLOGY (PEGASUS)R35GM124939 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI MONTE, ANDREW ALBERT · 2017 to 2021
$2.1M
Training in Molecular and Systems ToxicologyT32ES029074 · NIEHS · UNIVERSITY OF COLORADO DENVER · PI Jared Michael Brown · 2019 to 2026
$1.1M
NCATS NIH HHS UL1 TR001082NIEHS NIH HHS T32 ES029074NIGMS NIH HHS R35 GM124939NIGMS NIH HHS R35GM124939
6 · The paper itself

Abstract

introductionTherapeutic acetaminophen (APAP) ingestion causes asymptomatic drug-induced liver injury in some patients. In most cases, elevations in alanine aminotransferase (ALT) are transient and return to the normal range, even with continued APAP ingestion, though ALT elevation persists in some patients unpredictably. The etiology of this liver injury or adaption is unclear. Our objective was to identify new pharmacogenomic variants associated with elevated ALT or elevated protein adduct concentrations in patients receiving therapeutic acetaminophen.

methodsWe performed genome-wide sequencing analysis on eight patients using leftover blood samples from an observational study that administered four grams of acetaminophen for up to 16 days to all patients. Two patients with ALT elevations > two times the upper limit of normal, two patients with no adduct formation, and four control patients were sequenced. The genomes were aligned with the GRCh38 reference sequence, and variants with predicted low, moderate, or high impact on the subsequent proteins were first manually curated for biologic plausibility, then organized and examined in the REACTOME pathway analysis program.

resultsWe found 394 variants in 107 genes associated with elevated ALT. Variants associated with ALT elevation predominantly involved genes in the immune system (MHC class II complex genes), endoplasmic reticulum stress response (SEC23B and XBP1), oxidative phosphorylation (NDUFB9), and WNT/beta-catenin signaling (FZD5). Variants associated with elevated adducts were primarily in signal transduction (MUC20) and DNA repair mechanisms (P53).

conclusionsWhile underpowered, genetic variants in immune system genes may be associated with drug-induced liver injury at therapeutic doses of acetaminophen.

Indexed as

Genetic Predisposition to DiseaseAcetaminophenAdultAnalgesics, Non-NarcoticChemical and Drug Induced Liver InjuryFemaleGenetic VariationGenome-Wide Association StudyHumansImmune SystemMaleMiddle AgedPainPilot ProjectsYoung AdultAcetaminophenAnalgesics, Non-NarcoticAcetaminophenALTDrug induced liver injuryHepatotoxicityPharmacogenomics

Identifiers

PMID33051802
PMCPMC8017040
OpenAlexW3091975512

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.