Evidence map›Paper›PMID 33051119›Full record

ArticleThe Journal of arthroplasty2021

Use of Natural Language Processing Algorithms to Identify Common Data Elements in Operative Notes for Knee Arthroplasty.

Elham Sagheb, Taghi Ramazanian, Ahmad P Tafti, Sunyang Fu, Walter K Kremers, Daniel J Berry, David G Lewallen, Sunghwan Sohn, Hilal Maradit Kremers

Abstract read
In one paragraph

Article in The Journal of arthroplasty, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Review
  4. Article
  5. Review
  6. Article
  7. Review
  8. Review
  9. Article
  10. Article
  11. Article
  12. Global mapping of institutional and hospital-based (Level II-IV) arthroplasty registries: a scoping review.European journal of orthopaedic surgery & traumatology : orthopedie traumatologie · 2024
    Article
  13. Review
  14. Article
  15. Article
  16. Review
  17. Natural language processing: using artificial intelligence to understand human language in orthopedics.Knee surgery, sports traumatology, arthroscopy : official journal of the ESSKA · 2023
    Review
  18. Article
  19. The development and deployment of machine learning models.Knee surgery, sports traumatology, arthroscopy : official journal of the ESSKA · 2022
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Elham SaghebDepartment of Health Sciences Research, Mayo Clinic, Rochester, MN.
Taghi RamazanianDepartment of Health Sciences Research, Mayo Clinic, Rochester, MN.
Ahmad P TaftiDepartment of Health Sciences Research, Mayo Clinic, Rochester, MN.
Sunyang FuDepartment of Health Sciences Research, Mayo Clinic, Rochester, MN.
Walter K KremersDepartment of Health Sciences Research, Mayo Clinic, Rochester, MN.
Daniel J BerryDepartment of Orthopedic Surgery, Mayo Clinic, Rochester, MN.
David G LewallenDepartment of Orthopedic Surgery, Mayo Clinic, Rochester, MN.
Sunghwan SohnDepartment of Health Sciences Research, Mayo Clinic, Rochester, MN.
Hilal Maradit KremersDepartment of Health Sciences Research, Mayo Clinic, Rochester, MN; Department of Orthopedic Surgery, Mayo Clinic, Rochester, MN.

Funding

Resource CoreP30AR076312 · NIAMS · MAYO CLINIC ROCHESTER · PI Daniel Berry · 2019 to 2026
$5.5M
Precision Orthopedics: Multimodal Data Infrastructure for Personalized Surgical Decisions in Joint ArthroplastyR01AR073147 · NIAMS · MAYO CLINIC ROCHESTER · PI Hilal Maradit Kremers · 2018 to 2026
$3.5M
NIAMS NIH HHS P30 AR076312NIAMS NIH HHS R01 AR073147
6 · The paper itself

Abstract

backgroundNatural language processing (NLP) methods have the capability to process clinical free text in electronic health records, decreasing the need for costly manual chart review, and improving data quality. We developed rule-based NLP algorithms to automatically extract surgery specific data elements from knee arthroplasty operative notes.

methodsWithin a cohort of 20,000 knee arthroplasty operative notes from 2000 to 2017 at a large tertiary institution, we randomly selected independent pairs of training and test sets to develop and evaluate NLP algorithms to detect five major data elements. The size of the training and test datasets were similar and ranged between 420 to 1592 surgeries. Expert rules using keywords in operative notes were used to implement NLP algorithms capturing: (1) category of surgery (total knee arthroplasty, unicompartmental knee arthroplasty, patellofemoral arthroplasty), (2) laterality of surgery, (3) constraint type, (4) presence of patellar resurfacing, and (5) implant model (catalog numbers). We used institutional registry data as our gold standard to evaluate the NLP algorithms.

resultsNLP algorithms to detect the category of surgery, laterality, constraint, and patellar resurfacing achieved 98.3%, 99.5%, 99.2%, and 99.4% accuracy on test datasets, respectively. The implant model algorithm achieved an F1-score (harmonic mean of precision and recall) of 99.9%.

conclusionsNLP algorithms are a promising alternative to costly manual chart review to automate the extraction of embedded information within knee arthroplasty operative notes. Further validation in other hospital settings will enhance widespread implementation and efficiency in data capture for research and clinical purposes. LEVEL OF EVIDENCE: Level III.

Indexed as

Arthroplasty, Replacement, KneeAlgorithmsCommon Data ElementsElectronic Health RecordsHumansNatural Language Processingartificial intelligenceconstraintelectronic health recordsnatural language processingpatella resurfacingtotal knee arthroplasty

Identifiers

PMID33051119
PMCPMC7897213

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.