Evidence map›Paper›PMID 33050881›Full record

ArticleBMC plant biology2020

Identification, gene expression and genetic polymorphism of zinc finger A20/AN1 stress-associated genes, HvSAP, in salt stressed barley from Kazakhstan.

Akmaral Baidyussen, Maryam Aldammas, Akhylbek Kurishbayev, Malika Myrzabaeva, Askar Zhubatkanov, Grigory Sereda, Raisa Porkhun, Sergey Sereda, Satyvaldy Jatayev, Peter Langridge and 4 more

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
4.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 27 citations in OpenAlex.

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  8. Expression of Specific Alleles of Zinc-Finger Transcription Factors,International journal of molecular sciences · 2021
    Article
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  11. International journal of molecular sciences · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 3 countries.

Akmaral BaidyussenFaculty of Agronomy, S. Seifullin Kazakh AgroTechnical University, Nur-Sultan, Kazakhstan.
Maryam AldammasCollege of Science and Engineering, Biological Sciences, Flinders University, Adelaide, SA, Australia.
Akhylbek KurishbayevFaculty of Agronomy, S. Seifullin Kazakh AgroTechnical University, Nur-Sultan, Kazakhstan.
Malika MyrzabaevaFaculty of Agronomy, S. Seifullin Kazakh AgroTechnical University, Nur-Sultan, Kazakhstan.
Askar ZhubatkanovFaculty of Agronomy, S. Seifullin Kazakh AgroTechnical University, Nur-Sultan, Kazakhstan.
Grigory SeredaA.F. Khristenko Karaganda Agricultural Experimental Station, Karaganda, Kazakhstan.
Raisa PorkhunA.F. Khristenko Karaganda Agricultural Experimental Station, Karaganda, Kazakhstan.
Sergey SeredaA.F. Khristenko Karaganda Agricultural Experimental Station, Karaganda, Kazakhstan.
Satyvaldy JatayevFaculty of Agronomy, S. Seifullin Kazakh AgroTechnical University, Nur-Sultan, Kazakhstan. satidjo@gmail.com.
Peter LangridgeWheat Initiative, Julius-Kühn-Institute, Berlin, Germany.
Carly SchrammCollege of Science and Engineering, Biological Sciences, Flinders University, Adelaide, SA, Australia.
Colin L D JenkinsCollege of Science and Engineering, Biological Sciences, Flinders University, Adelaide, SA, Australia.
Kathleen L SooleCollege of Science and Engineering, Biological Sciences, Flinders University, Adelaide, SA, Australia.
Yuri ShavrukovCollege of Science and Engineering, Biological Sciences, Flinders University, Adelaide, SA, Australia. yuri.shavrukov@flinders.edu.au.
Flinders University · AUS.Seifullin Kazakh Agro Technical University · KZJulius Kühn-Institut · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundA family of genes designated as the Zinc finger A20/AN1 Transcription factors encoding stress-associated proteins (SAP) are well described in Arabidopsis and rice, and include 14 AtSAP and 18 OsSAP genes that are associated with variable tolerances to multiple abiotic stresses. The SAP gene family displays a great diversity in its structure and across different plant species. The aim of this study was to identify all HvSAP genes in barley (Hordeum vulgare L.), to analyse the expression of selected genes in response to salinity in barley leaves and develop SNP marker for HvSAP12 to evaluate the association between genotypes of barley plants and their grain yield in field trials.

resultsIn our study, 17 HvSAP genes were identified in barley, which were strongly homologous to rice genes. Five genes, HvSAP5, HvSAP6, HvSAP11, HvSAP12 and HvSAP15, were found to be highly expressed in leaves of barley plants in response to salt stress in hydroponics compared to controls, using both semi-quantitative RT-PCR and qPCR analyses. The Amplifluor-like SNP marker KATU-B30 was developed and used for HvSAP12 genotyping. A strong association (R

conclusionsA group of HvSAP genes, and HvSAP12 in particular, play an important role in the tolerance of barley plants to salinity and drought, and is associated with higher grain yield in field trials. Marker-assisted selection with SNP marker KATU-B30 can be applied in barley breeding to improve grain yield production under conditions of abiotic stress.

Indexed as

Polymorphism, Single NucleotideComputational BiologyGenetic MarkersHordeumKazakhstanOryzaPlant ProteinsProtein DomainsReal-Time Polymerase Chain ReactionSalt StressSpecies SpecificityTranscription FactorsTranscriptomeZinc FingersGenetic MarkersPlant ProteinsTranscription FactorsBarleyGene expressionGenetic polymorphismHvSAPMarker-assisted selectionSalinitySNP markerStress-associated proteinsZinc finger A20/AN1 transcription factor

Identifiers

PMID33050881
PMCPMC7556924
OpenAlexW3092628988

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.