Evidence map›Paper›PMID 33048555›Full record

ArticleJournal of chemical theory and computation2020

Explicit Representation of Cation-π Interactions in Force Fields with 1/

Aysegul Turupcu, Julian Tirado-Rives, William L Jorgensen

Abstract read
In one paragraph

Article in Journal of chemical theory and computation, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Simulating Metal-Imidazole Complexes.Journal of chemical theory and computation · 2024
    Article
  8. Article
  9. Information-Rich, Dual-FunctionJournal of the American Chemical Society · 2023
    Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Aysegul TurupcuDepartment of Chemistry, Yale University, New Haven, Connecticut 06520-8107, United States.
Julian Tirado-RivesDepartment of Chemistry, Yale University, New Haven, Connecticut 06520-8107, United States.ORCID http://orcid.org/0000-0001-7330-189X
William L JorgensenDepartment of Chemistry, Yale University, New Haven, Connecticut 06520-8107, United States.ORCID http://orcid.org/0000-0002-3993-9520

Funding

POTENTIAL FUNCTIONS FOR WATER PROTEIN INTERACTIONSR01GM032136 · NIGMS · YALE UNIVERSITY · PI JORGENSEN, WILLIAM L. · 1985 to 2023
$8.2M
NIGMS NIH HHS R01 GM032136
6 · The paper itself

Abstract

The binding energies for cation-π complexation are underestimated by traditional fixed-charge force fields owing to their lack of explicit treatment of ion-induced dipole interactions. To address this deficiency, an explicit treatment of cation-π interactions has been introduced into the OPLS-AA force field. Following prior work with atomic cations, it is found that cation-π interactions can be handled efficiently by augmenting the usual 12-6 Lennard-Jones potentials with 1/

Indexed as

Density Functional TheoryModels, MolecularFuransJanus Kinase 2Protein DomainsThermodynamicsWaterFuransJanus Kinase 2tetrahydrofuranWater

Identifiers

PMID33048555
PMCPMC7935430

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.