Evidence map›Paper›PMID 33048183›Full record

ArticlePediatric radiology2021

DeepLiverNet: a deep transfer learning model for classifying liver stiffness using clinical and T2-weighted magnetic resonance imaging data in children and young adults.

Hailong Li, Lili He, Jonathan A Dudley, Thomas C Maloney, Elanchezhian Somasundaram, Samuel L Brady, Nehal A Parikh, Jonathan R Dillman

Open access · greenAbstract read
In one paragraph

Article in Pediatric radiology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 16 citations in OpenAlex.

  1. Review
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  5. ENRICHing medical imaging training sets enables more efficient machine learning.Journal of the American Medical Informatics Association : JAMIA · 2023
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  8. A primer on texture analysis in abdominal radiology.Abdominal radiology (New York) · 2022
    Review
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Hailong LiThe Perinatal Institute and Section of Neonatology, Perinatal and Pulmonary Biology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA.
Lili HeThe Perinatal Institute and Section of Neonatology, Perinatal and Pulmonary Biology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA.
Jonathan A DudleyImaging Research Center, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA.
Thomas C MaloneyImaging Research Center, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA.
Elanchezhian SomasundaramImaging Research Center, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA.
Samuel L BradyDepartment of Radiology, Cincinnati Children's Hospital Medical Center, 3333 Burnet Ave., MLC 5031, Cincinnati, OH, 45229, USA.
Nehal A ParikhThe Perinatal Institute and Section of Neonatology, Perinatal and Pulmonary Biology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA.
Jonathan R DillmanImaging Research Center, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA. Jonathan.Dillman@cchmc.org.ORCID 0000-0003-0124-0164
Cincinnati Children's Hospital Medical Center · US

Funding

Quantification of Liver Fibrosis with MRI and Deep LearningR01EB030582 · NIBIB · CINCINNATI CHILDRENS HOSP MED CTR · PI HE, LILI · 2021 to 2024
$2.5M
MRI and Deep Learning for Early Prediction of Neurodevelopmental Deficits in Very Preterm InfantsR01EB029944 · NIBIB · CINCINNATI CHILDRENS HOSP MED CTR · PI HE, LILI · 2020 to 2023
$2.1M
NIBIB NIH HHS R01 EB029944NIBIB NIH HHS R01 EB030582
6 · The paper itself

Abstract

backgroundAlthough MR elastography allows for quantitative evaluation of liver stiffness to assess chronic liver diseases, it has associated drawbacks related to additional scanning time, patient discomfort, and added costs.

objectiveTo develop a machine learning model that can categorically classify the severity of liver stiffness using both anatomical T2-weighted MRI and clinical data for children and young adults with known or suspected pediatric chronic liver diseases. MATERIALS AND

methodsWe included 273 subjects with known or suspected chronic liver disease. We extracted data including axial T2-weighted fast spin-echo fat-suppressed images, clinical data (e.g., demographic/anthropomorphic data, particular medical diagnoses, laboratory values) and MR elastography liver stiffness measurements. We propose DeepLiverNet (a deep transfer learning model) to classify patients into one of two groups: no/mild liver stiffening (<3 kPa) or moderate/severe liver stiffening (≥3 kPa). We conducted internal cross-validation using 178 subjects, and external validation using an independent cohort of 95 subjects. We assessed diagnostic performance using accuracy, sensitivity, specificity and area under the receiver operating characteristic curve (AuROC).

resultsIn the internal cross-validation experiment, the combination of clinical and imaging data produced the best performance (AuROC=0.86) compared to clinical (AuROC=0.83) or imaging (AuROC=0.80) data alone. Using both clinical and imaging data, the DeepLiverNet correctly classified patients with accuracy of 88.0%, sensitivity of 74.3% and specificity of 94.6%. In our external validation experiment, this same deep learning model achieved an accuracy of 80.0%, sensitivity of 61.1%, specificity of 91.5% and AuROC of 0.79.

conclusionA deep learning model that incorporates clinical data and anatomical T2-weighted MR images might provide a means of risk-stratifying liver stiffness and directing the use of MR elastography.

Indexed as

Elasticity Imaging TechniquesLiver DiseasesChildHumansLiverMachine LearningMagnetic Resonance ImagingYoung AdultChildrenChronic liver diseaseDeep learningLiverLiver stiffnessMagnetic resonance elastographyMagnetic resonance imagingRisk stratification

Identifiers

PMID33048183
PMCPMC8675279
OpenAlexW3092331655

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.