Evidence map›Paper›PMID 33046702›Full record

ArticleNature communications2020

High-throughput mutagenesis reveals unique structural features of human ADAR1.

SeHee Park, Erin E Doherty, Yixuan Xie, Anil K Padyana, Fang Fang, Yue Zhang, Agya Karki, Carlito B Lebrilla, Justin B Siegel, Peter A Beal

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
0.6field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Phylogenetic and structural analysis of Hydra ADAR.Archives of biochemistry and biophysics · 2025
    Article
  8. Article
  9. Article
  10. Databases of ligand-binding pockets and protein-ligand interactions.Computational and structural biotechnology journal · 2024
    Review
  11. Article
  12. Review
  13. ADAR Family Proteins: A Structural Review.Current issues in molecular biology · 2024
    Review
  14. Article
  15. Review
  16. Article
  17. RNA editing: Expanding the potential of RNA therapeutics.Molecular therapy : the journal of the American Society of Gene Therapy · 2023
    Review
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

SeHee ParkDepartment of Chemistry, University of California, Davis, Davis, CA, USA.
Erin E DohertyDepartment of Chemistry, University of California, Davis, Davis, CA, USA.ORCID http://orcid.org/0000-0002-1555-4124
Yixuan XieDepartment of Chemistry, University of California, Davis, Davis, CA, USA.
Anil K PadyanaAgios Pharmaceuticals, Cambridge, MA, USA.ORCID http://orcid.org/0000-0001-5088-3401
Fang FangViva Biotech Ltd., Shanghai, China.
Yue ZhangDepartment of Chemistry, University of California, Davis, Davis, CA, USA.
Agya KarkiDepartment of Chemistry, University of California, Davis, Davis, CA, USA.
Carlito B LebrillaDepartment of Chemistry, University of California, Davis, Davis, CA, USA.ORCID http://orcid.org/0000-0001-7190-5323
Justin B SiegelDepartment of Chemistry, University of California, Davis, Davis, CA, USA.
Peter A BealDepartment of Chemistry, University of California, Davis, Davis, CA, USA. pabeal@ucdavis.edu.ORCID http://orcid.org/0000-0003-4855-7185
University of California, Davis · USAgios Pharmaceuticals (United States) · USViva Biotech (China) · CN

Funding

Staff InvestigatorsP30CA093373 · NCI · UNIVERSITY OF CALIFORNIA DAVIS · PI Laura Marcu · 2002 to 2026
$84.9M
Workshop on Environmental Technology Transfer and EntrepreneurshipP42ES004699 · NIEHS · UNIVERSITY OF CALIFORNIA DAVIS · PI HAMMOCK, BRUCE D · 1987 to 2021
$50.1M
The Bioorganic Chemistry Of RNA Editing By ADARSR01GM061115 · NIGMS · UNIVERSITY OF UTAH · PI BEAL, PETER A. · 2001 to 2020
$4.5M
Enzymatic formation of the hydrocarbon skeletons underlying diterpenoid diversityR01GM076324 · NIGMS · IOWA STATE UNIVERSITY · PI PETERS, REUBEN JOHN · 2006 to 2019
$3.4M
UC Davis Training Program in Chemical BiologyT32GM113770 · NIGMS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI BEAL, PETER A. · 2015 to 2019
$742k
UC Davis Shared Astrios Cell SorterS10OD018223 · OD · UNIVERSITY OF CALIFORNIA AT DAVIS · PI SHACKLETT, BARBARA L. · 2015 to 2015
$555k
Shared LSRII Cytometer Equipment Application - UC Davis Stem Cell ProgramS10RR026825 · NCRR · UNIVERSITY OF CALIFORNIA AT DAVIS · PI NOLTA, JAN A. · 2010 to 2010
$500k
EXTRAMURAL RESEARCH FACILITIES CONSTRUCTIONC06RR012088 · NCRR · UNIVERSITY OF CALIFORNIA DAVIS · PI CURRY, FITZ-ROY E · 1996 to 1996
–
NCI NIH HHS P30 CA093373NCRR NIH HHS C06 RR012088NCRR NIH HHS S10 RR026825NIEHS NIH HHS P42 ES004699NIGMS NIH HHS R01 GM061115NIGMS NIH HHS R01 GM076324NIGMS NIH HHS T32 GM113770NIH HHS S10 OD018223
6 · The paper itself

Abstract

Adenosine Deaminases that act on RNA (ADARs) are enzymes that catalyze adenosine to inosine conversion in dsRNA, a common form of RNA editing. Mutations in the human ADAR1 gene are known to cause disease and recent studies have identified ADAR1 as a potential therapeutic target for a subset of cancers. However, efforts to define the mechanistic effects for disease associated ADAR1 mutations and the rational design of ADAR1 inhibitors are limited by a lack of structural information. Here, we describe the combination of high throughput mutagenesis screening studies, biochemical characterization and Rosetta-based structure modeling to identify unique features of ADAR1. Importantly, these studies reveal a previously unknown zinc-binding site on the surface of the ADAR1 deaminase domain which is important for ADAR1 editing activity. Furthermore, we present structural models that explain known properties of this enzyme and make predictions about the role of specific residues in a surface loop unique to ADAR1.

Indexed as

Adenosine DeaminaseBinding SitesHumansMutagenesisMutationProtein DomainsRNA-Binding ProteinsZincADAR protein, humanAdenosine DeaminaseRNA-Binding ProteinsZinc

Identifiers

PMID33046702
PMCPMC7550611
OpenAlexW3092040529

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.