Evidence map›Paper›PMID 33046696›Full record

ArticleNature communications2020

Type 2 and interferon inflammation regulate SARS-CoV-2 entry factor expression in the airway epithelium.

Satria P Sajuthi, Peter DeFord, Yingchun Li, Nathan D Jackson, Michael T Montgomery, Jamie L Everman, Cydney L Rios, Elmar Pruesse, James D Nolin, Elizabeth G Plender and 18 more

2 registry-linked trialsOpen access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to 2 registered trials, which are not on this map. Cited by 142 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
142citing papers in PubMed, 1 pooled it
22.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT04990531 naunknown statusnot on this mapstarted 2021, after this paper: background citation

Low-fielD magnEtiC Resonance Imaging of pulmonarY Parenchyma Changes Associated wiTh Confirmed SARS-CoV-2 Infection in Children and Adolescents

TypeinterventionalSponsorUniversity of Erlangen-Nürnberg Medical SchoolRan2021 to 2022Enrolled68ConditionsSars-CoV-2 Infection, Lung Fibrosis, Covid19ArmsLow-field magnetic resonance imaging, Blood sample
NCT05445531 naunknown statusnot on this mapstarted 2022, after this paper: background citation

Low-field Magnetic Resonance Imaging to Assess Changes in Pulmonary Function Parameters in Confirmed Pediatric SARS-CoV-2 Infection

TypeinterventionalSponsorUniversity of Erlangen-Nürnberg Medical SchoolRan2022 to 2023Enrolled111ConditionsCOVID-19, COVID-19 Respiratory Infection, Long COVIDArmsLow-field magnetic resonance imaging, Nailfold capillaroscopy, Spiroergometry, Realtime deformability cytometry
3 · Its place in the literature

Who cites it

142 citing papers in PubMed, 1 synthesis or guideline pooled it, 194 citations in OpenAlex.

  1. Pooled it
  2. Context-specific genetic effects inform endotypes and treatment in asthma.The Journal of allergy and clinical immunology · 2026
    Article
  3. Skin as a Potential Entry Point for SARS-CoV-2 Virus.International journal of molecular sciences · 2026
    Article
  4. SKIN AS A POTENTIAL ENTRY POINT FOR SARS-COV-2.bioRxiv : the preprint server for biology · 2026
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Type 2 immune responses are associated with less severe COVID-19 in a hospitalized cohort.The journal of allergy and clinical immunology. Global · 2025
    Article
  10. Review
  11. Review
  12. The PRIMERO birth cohort: Design and baseline characteristics.The journal of allergy and clinical immunology. Global · 2025
    Article
  13. Review
  14. Article
  15. Type 1 Immune Responses Related to Viral Infection Influence Corticosteroid Response in Asthma.American journal of respiratory and critical care medicine · 2025
    Article
  16. Article
  17. Viral Determinants of Childhood Asthma Exacerbation Severity and Treatment Response.The journal of allergy and clinical immunology. In practice · 2025
    Article
  18. Article
  19. Review
  20. Review

82 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

28 authors at 8 institutions in 2 countries.

Satria P Sajuthi *Center for Genes, Environment, and Health, National Jewish Health, Denver, CO, USA.
Peter DeFord *Center for Genes, Environment, and Health, National Jewish Health, Denver, CO, USA.ORCID http://orcid.org/0000-0003-1445-7135
Yingchun LiCenter for Genes, Environment, and Health, National Jewish Health, Denver, CO, USA.
Nathan D JacksonCenter for Genes, Environment, and Health, National Jewish Health, Denver, CO, USA.
Michael T MontgomeryCenter for Genes, Environment, and Health, National Jewish Health, Denver, CO, USA.ORCID http://orcid.org/0000-0002-6748-2329
Jamie L EvermanCenter for Genes, Environment, and Health, National Jewish Health, Denver, CO, USA.ORCID http://orcid.org/0000-0002-1935-4672
Cydney L RiosCenter for Genes, Environment, and Health, National Jewish Health, Denver, CO, USA.
Elmar PruesseCenter for Genes, Environment, and Health, National Jewish Health, Denver, CO, USA.
James D NolinCenter for Genes, Environment, and Health, National Jewish Health, Denver, CO, USA.ORCID http://orcid.org/0000-0002-6611-1550
Elizabeth G PlenderCenter for Genes, Environment, and Health, National Jewish Health, Denver, CO, USA.
Michael E WechslerDepartment of Medicine, National Jewish Health, Denver, CO, USA.
Angel C Y MakDepartment of Medicine, University of California San Francisco, San Francisco, CA, USA.ORCID http://orcid.org/0000-0002-5372-4198
Celeste EngDepartment of Medicine, University of California San Francisco, San Francisco, CA, USA.
Sandra SalazarDepartment of Medicine, University of California San Francisco, San Francisco, CA, USA.
Vivian MedinaCentro de Neumología Pediátrica, San Juan, Puerto Rico.
Eric M WohlfordDepartment of Medicine, University of California San Francisco, San Francisco, CA, USA.
Scott HuntsmanDepartment of Medicine, University of California San Francisco, San Francisco, CA, USA.
Deborah A NickersonDepartment of Genome Sciences, University of Washington, Seattle, WA, USA.
Soren GermerNew York Genome Center, New York City, NY, USA.
Michael C ZodyNew York Genome Center, New York City, NY, USA.
Gonçalo AbecasisCenter for Statistical Genetics, University of Michigan, Ann Arbor, MI, USA.ORCID http://orcid.org/0000-0003-1509-1825
Hyun Min KangCenter for Statistical Genetics, University of Michigan, Ann Arbor, MI, USA.
Kenneth M RiceDepartment of Biostatistics, University of Washington, Seattle, WA, USA.ORCID http://orcid.org/0000-0002-3071-7278
Rajesh KumarDepartment of Pediatrics, Ann and Robert H. Lurie Children's Hospital of Chicago, Northwestern University, Chicago, IL, USA.
Sam OhDepartment of Medicine, University of California San Francisco, San Francisco, CA, USA.ORCID http://orcid.org/0000-0002-2815-6037
Jose Rodriguez-SantanaCentro de Neumología Pediátrica, San Juan, Puerto Rico.
Esteban G BurchardDepartment of Medicine, University of California San Francisco, San Francisco, CA, USA.
Max A SeiboldCenter for Genes, Environment, and Health, National Jewish Health, Denver, CO, USA. seiboldm@njhealth.org.ORCID http://orcid.org/0000-0002-8685-4263
National Jewish Health · USUniversity of California, San Francisco · USCentro de Neumologia Pediatrica · PRNew York Genome Center · USUniversity of Michigan · USUniversity of Washington · USNorthwestern University · USUniversity of Colorado Hospital · US

Funding

New York Center for Collaborative Research In Common Disease Genomics: Genome Aggregation and Joint Variant Calling for CCDG Freeze2UM1HG008901 · NHGRI · NEW YORK GENOME CENTER · PI MANIATIS, THOMAS P, WIGLER, MICHAEL H · 2016 to 2020
$56.6M
Role of miRNAs in Th2-Driven inflammation in AsthmaP01HL107202 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FAHY, JOHN V · 2012 to 2023
$23.3M
Studies of Rare Genetic Variation in the Isolated Population of SardiniaR01HL117626 · NHLBI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ABECASIS, GONCALO · 2013 to 2016
$10.5M
Natural History of Viral Induced Airway Dysfunction and Asthma in Minority ChildrenU01HL138626 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI RODRIGUEZ-SANTANA, JOSE, SEIBOLD, MAX A · 2018 to 2022
$10.0M
The Airway Functional Genomics of Bronchodilator Drug Response in Minority Children with AsthmaR01HL117004 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI AHITUV, NADAV, SEIBOLD, MAX A · 2013 to 2022
$9.3M
Transcriptomic and Genetic Endotyping of Exacerbation-Prone AsthmaticsP01HL132821 · NHLBI · NATIONAL JEWISH HEALTH · PI SEIBOLD, MAX A · 2017 to 2021
$9.0M
Rare variants and NHLBI traits in deeply phenotyped cohortsR01HL120393 · NHLBI · UNIVERSITY OF WASHINGTON · PI PSATY, BRUCE M, RICE, KENNETH M. · 2014 to 2016
$8.9M
CLINICAL, PHARMACOLOGY, DRUG ACTION &PHARMACOKINETICST32GM007546 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Radojka Savic · 1985 to 2026
$8.9M
Social Interventions to address disparities In young adult tobacco useP60MD006902 · NIMHD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BIBBINS-DOMINGO, KIRSTEN · 2012 to 2016
$6.4M
Rare variants and NHLBI traits in deeply phenotyped cohortsU01HL120393 · NHLBI · UNIVERSITY OF WASHINGTON · PI PSATY, BRUCE M, RICE, KENNETH M. · 2017 to 2018
$5.6M
Gene-environments and Admixture in Latino Asthmatics (GALA 2)R01ES015794 · NIEHS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BURCHARD, ESTEBAN GONZALEZ · 2008 to 2012
$5.4M
Optimizing imputation for diverse populations in a distributed frameworkU01HG009080 · NHGRI · STANFORD UNIVERSITY · PI KENNY, EIMEAR ELIZABETH · 2016 to 2020
$5.2M
NHGRI NIH HHS U01 HG009080NHGRI NIH HHS U24 HG008956NHGRI NIH HHS UM1 HG008901NHLBI NIH HHS HHSN268201800001CNHLBI NIH HHS K01 HL140218NHLBI NIH HHS P01 HL107202NHLBI NIH HHS P01 HL132821NHLBI NIH HHS R01 HL117004NHLBI NIH HHS R01 HL117626NHLBI NIH HHS R01 HL120393NHLBI NIH HHS R01 HL128439NHLBI NIH HHS R01 HL135156NHLBI NIH HHS R01 HL141845NHLBI NIH HHS R01 HL141992NHLBI NIH HHS U01 HL120393NHLBI NIH HHS U01 HL138626NIEHS NIH HHS HHSN268201600032CNIEHS NIH HHS R01 ES015794NIGMS NIH HHS T32 GM007546NIMHD NIH HHS P60 MD006902NIMHD NIH HHS R01 MD010443U.S. Department of Health & Human Services | NIH | National Heart, Lung, and Blood Institute (NHLBI) HL107202U.S. Department of Health & Human Services | NIH | National Heart, Lung, and Blood Institute (NHLBI) HL117004U.S. Department of Health & Human Services | NIH | National Heart, Lung, and Blood Institute (NHLBI) HL128439U.S. Department of Health & Human Services | NIH | National Heart, Lung, and Blood Institute (NHLBI) HL132821U.S. Department of Health & Human Services | NIH | National Heart, Lung, and Blood Institute (NHLBI) HL135156U.S. Department of Health & Human Services | NIH | National Heart, Lung, and Blood Institute (NHLBI) HL138626U.S. Department of Health & Human Services | NIH | National Institute on Minority Health and Health Disparities (NIMHD) MD010443
6 · The paper itself

Abstract

Coronavirus disease 2019 (COVID-19) is caused by SARS-CoV-2, an emerging virus that utilizes host proteins ACE2 and TMPRSS2 as entry factors. Understanding the factors affecting the pattern and levels of expression of these genes is important for deeper understanding of SARS-CoV-2 tropism and pathogenesis. Here we explore the role of genetics and co-expression networks in regulating these genes in the airway, through the analysis of nasal airway transcriptome data from 695 children. We identify expression quantitative trait loci for both ACE2 and TMPRSS2, that vary in frequency across world populations. We find TMPRSS2 is part of a mucus secretory network, highly upregulated by type 2 (T2) inflammation through the action of interleukin-13, and that the interferon response to respiratory viruses highly upregulates ACE2 expression. IL-13 and virus infection mediated effects on ACE2 expression were also observed at the protein level in the airway epithelium. Finally, we define airway responses to common coronavirus infections in children, finding that these infections generate host responses similar to other viral species, including upregulation of IL6 and ACE2. Our results reveal possible mechanisms influencing SARS-CoV-2 infectivity and COVID-19 clinical outcomes.

Indexed as

Angiotensin-Converting Enzyme 2BetacoronavirusChildCoronavirus InfectionsCOVID-19Epithelial CellsGene Expression ProfilingGene Expression RegulationGenetic VariationHost-Pathogen InteractionsHumansInflammationInterferonsInterleukin-13Middle AgedNasal MucosaACE2 protein, humanAngiotensin-Converting Enzyme 2IL13 protein, humanInterferonsInterleukin-13Peptidyl-Dipeptidase ASerine EndopeptidasesTMPRSS2 protein, human

Identifiers

PMID33046696
PMCPMC7550582
OpenAlexW3091902939

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LicenceCC BY
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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.