Evidence map›Paper›PMID 33045725›Full record

ArticleNucleic acids research2020

Stabilization of G-quadruplex DNA structures in Schizosaccharomyces pombe causes single-strand DNA lesions and impedes DNA replication.

Ikenna Obi, Matilda Rentoft, Vandana Singh, Jan Jamroskovic, Karam Chand, Erik Chorell, Fredrik Westerlund, Nasim Sabouri

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.4field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 31 citations in OpenAlex.

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  18. G-quadruplex DNA: a novel target for drug design.Cellular and molecular life sciences : CMLS · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Ikenna ObiDepartment of Medical Biochemistry and Biophysics, Umeå University, 901 87 Umeå, Sweden.
Matilda RentoftDepartment of Medical Biochemistry and Biophysics, Umeå University, 901 87 Umeå, Sweden.
Vandana SinghDepartment of Biology and Biological Engineering, Chalmers University of Technology, 412 96 Gothenburg, Sweden.
Jan JamroskovicDepartment of Medical Biochemistry and Biophysics, Umeå University, 901 87 Umeå, Sweden.
Karam ChandDepartment of Chemistry, Umeå University, 901 87 Umeå, Sweden.
Erik ChorellDepartment of Chemistry, Umeå University, 901 87 Umeå, Sweden.
Fredrik WesterlundDepartment of Biology and Biological Engineering, Chalmers University of Technology, 412 96 Gothenburg, Sweden.
Nasim SabouriDepartment of Medical Biochemistry and Biophysics, Umeå University, 901 87 Umeå, Sweden.
Umeå University · SEChalmers University of Technology · SE

Funding

Pathways to Mental Health Services Among Native WomenK01MH002018 · NIMH · UNIVERSITY OF NEW MEXICO · PI DURAN, BONNIE M · 2001 to 2005
$667k
NIMH NIH HHS K01 MH002018
6 · The paper itself

Abstract

G-quadruplex (G4) structures are stable non-canonical DNA structures that are implicated in the regulation of many cellular pathways. We show here that the G4-stabilizing compound PhenDC3 causes growth defects in Schizosaccharomyces pombe cells, especially during S-phase in synchronized cultures. By visualizing individual DNA molecules, we observed shorter DNA fragments of newly replicated DNA in the PhenDC3-treated cells, suggesting that PhenDC3 impedes replication fork progression. Furthermore, a novel single DNA molecule damage assay revealed increased single-strand DNA lesions in the PhenDC3-treated cells. Moreover, chromatin immunoprecipitation showed enrichment of the leading-strand DNA polymerase at sites of predicted G4 structures, suggesting that these structures impede DNA replication. We tested a subset of these sites and showed that they form G4 structures, that they stall DNA synthesis in vitro and that they can be resolved by the breast cancer-associated Pif1 family helicases. Our results thus suggest that G4 structures occur in S. pombe and that stabilized/unresolved G4 structures are obstacles for the replication machinery. The increased levels of DNA damage might further highlight the association of the human Pif1 helicase with familial breast cancer and the onset of other human diseases connected to unresolved G4 structures.

Indexed as

DNA Breaks, Single-StrandedDNA ReplicationG-QuadruplexesDNA, FungalDNA HelicasesFused-Ring CompoundsSchizosaccharomycesSchizosaccharomyces pombe ProteinsS PhaseDNA, FungalDNA HelicasesFused-Ring CompoundsPfh1 protein, S pombePhenDC3Schizosaccharomyces pombe Proteins

Identifiers

PMID33045725
PMCPMC7641769
OpenAlexW3092474992

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.