ArticleGenome biology and evolution2020
A Chromosome-Level Genome Assembly of Dendrobium Huoshanense Using Long Reads and Hi-C Data.
Article in Genome biology and evolution, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.
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Who cites it
36 citing papers in PubMed, 59 citations in OpenAlex.
- Orchid genome evolution and trait innovation.Journal of integrative plant biology · 2026Review
- Protocol for detecting genome-wide introgressed genes and evaluating their functional legacy.STAR protocols · 2026Article
- The transcriptomic and metabolomic mechanisms responsible for high medicinal quality in Dendrobium huoshanense under different cultivation techniques.BMC plant biology · 2026Article
- Unidirectional genomic introgression facilitates the colonization of an invasive orchid in arid, metal-enriched sedimentary habitats.Plant communications · 2026Article
- Genome-wide identification of UDP-glycosyltransferase gene family inFrontiers in plant science · 2026Article
- Comparative genomics analyses reveal genomic variation and evolutionary adaptation in Dendrobium orchids.Nature communications · 2025Article
- A chromosome-level genome assembly reveals triterpenoid biosynthesis in Clinopodium chinense.BMC plant biology · 2025Article
- Construction of Yeast One-Hybrid Library ofBiomolecules · 2025Article
- A chromosome-levelActa pharmaceutica Sinica. B · 2025Article
- Evolutionary Insight and Expression Pattern of WUSCHEL-Related Homebox Genes ofFood science & nutrition · 2025Article
- Genome-wide identification and expression profiling of MST, SUT and SWEET transporters in Dendrobium catenatum.BMC genomics · 2024Article
- Underlying mechanism of Dendrobium huoshanense resistance to lead stress using the quantitative proteomics method.BMC plant biology · 2024Article
- The Evolution of the WUSCHEL-Related Homeobox Gene Family inInternational journal of molecular sciences · 2024Article
- DhuFAP: a platform for gene functional analysis in Dendrobium huoshanense.BMC genomics · 2024Article
- Genome-wide identification and expression analysis ofPhysiology and molecular biology of plants : an international journal of functional plant biology · 2024Article
- Identification and Analysis ofInternational journal of molecular sciences · 2024Article
- IMP: bridging the gap for medicinal plant genomics.Nucleic acids research · 2024Article
- The CAM lineages of planet Earth.Annals of botany · 2023Article
- Genome-Wide Identification of TCP Gene Family inInternational journal of molecular sciences · 2023Article
- Genome-Wide Identification of the YABBY Gene Family inInternational journal of molecular sciences · 2023Article
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Authors and funding
37 authors at 7 institutions in 3 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Dendrobium huoshanense is used to treat various diseases in traditional Chinese medicine. Recent studies have identified active components. However, the lack of genomic data limits research on the biosynthesis and application of these therapeutic ingredients. To address this issue, we generated the first chromosome-level genome assembly and annotation of D. huoshanense. We integrated PacBio sequencing data, Illumina paired-end sequencing data, and Hi-C sequencing data to assemble a 1.285 Gb genome, with contig and scaffold N50 lengths of 598 kb and 71.79 Mb, respectively. We annotated 21,070 protein-coding genes and 0.96 Gb transposable elements, constituting 74.92% of the whole assembly. In addition, we identified 252 genes responsible for polysaccharide biosynthesis by Kyoto Encyclopedia of Genes and Genomes functional annotation. Our data provide a basis for further functional studies, particularly those focused on genes related to glycan biosynthesis and metabolism, and have implications for both conservation and medicine.
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