Evidence map›Paper›PMID 33044062›Full record

ArticleJournal of the American Chemical Society2020

A Small Molecule Fluorogenic Probe for the Detection of Sphingosine in Living Cells.

Andrew K Rudd, Neel Mittal, Esther W Lim, Christian M Metallo, Neal K Devaraj

Open access · greenAbstract read
In one paragraph

Article in Journal of the American Chemical Society, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.4field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 31 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. A Fluorogenic Hydrazino-Pictet-Spengler Reaction in Live Cells.Angewandte Chemie (International ed. in English) · 2025
    Article
  5. Article
  6. Synthetic Lipid Biology.Chemical reviews · 2025
    Review
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Andrew K RuddDepartment of Chemistry and Biochemistry, University of California San Diego, La Jolla, California 92093, United States.ORCID 0000-0002-9862-1635
Neel MittalDepartment of Chemistry and Biochemistry, University of California San Diego, La Jolla, California 92093, United States.
Esther W LimDepartment of Bioengineering, University of California San Diego, La Jolla, California 92093, United States.
Christian M MetalloDepartment of Bioengineering, University of California San Diego, La Jolla, California 92093, United States.
Neal K DevarajDepartment of Chemistry and Biochemistry, University of California San Diego, La Jolla, California 92093, United States.ORCID 0000-0002-8033-9973
University of California San Diego · US

Funding

Contemporary Approaches to Cancer Cell Signaling and CommunicationT32CA009523 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI DONOGHUE, DANIEL J, YANG, JING · 1985 to 2025
$12.1M
Training in Multi-Scale Analysis of Biological Structure and FunctionT32EB009380 · NIBIB · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Andrew D. McCulloch, Padmini Rangamani · 2009 to 2026
$4.8M
Amplifying PET Imaging Signals for In Vivo Detection of Pancreatic Beta-cellsDP2DK111801 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI DEVARAJ, NEAL KRISHNA · 2016 to 2018
$2.0M
Non-essential amino acids and sphingolipid diversity in cancer progressionR01CA234245 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI METALLO, CHRISTIAN MICHAEL · 2019 to 2023
$1.9M
NCI NIH HHS R01 CA234245NCI NIH HHS T32 CA009523NIBIB NIH HHS T32 EB009380NIDDK NIH HHS DP2 DK111801
6 · The paper itself

Abstract

The single-chained sphingolipid sphingosine is an essential structural lipid and signaling molecule. Abnormal sphingosine metabolism is observed in several diseases, including cancer, diabetes, and Alzheimer's. Despite its biological importance, there is a lack of tools for detecting sphingosine in living cells. This is likely due to the broader challenge of developing highly selective and live-cell compatible affinity probes for hydrophobic lipid species. In this work, we have developed a small molecule fluorescent turn-on probe for labeling sphingosine in living cells. We demonstrate that this probe exhibits a dose-dependent response to sphingosine and is able to detect endogenous pools of sphingosine. Using our probe, we successfully detected sphingosine accumulation in cells from patients with Niemann-Pick type C1 (NPC1), a lipid transport disorder in which increased sphingosine mediates disease progression. This work provides a simple and accessible method for the detection of sphingosine and should facilitate study of this critical signaling lipid in biology and disease.

Indexed as

AldehydesFluorescent DyesHeLa CellsHumansMicroscopy, FluorescenceMolecular StructureOptical ImagingSmall Molecule LibrariesSphingosineAldehydesFluorescent DyessalicylaldehydeSmall Molecule LibrariesSphingosine

Identifiers

PMID33044062
PMCPMC8849011
OpenAlexW3092072607

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.