Evidence map›Paper›PMID 33043974›Full record

ArticleBioscience reports2020

Identification of three molecular subtypes based on immune infiltration in ovarian cancer and its prognostic value.

Juan Liu, Zongjian Tan, Jun He, Tingting Jin, Yuanyuan Han, Li Hu, Jukun Song, Shengwen Huang

Open access · goldAbstract read
In one paragraph

Article in Bioscience reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.2field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 21 citations in OpenAlex.

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  6. A novel CD8Inflammation research : official journal of the European Histamine Research Society ... [et al.] · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Juan LiuSchool of Medicine, Guizhou University, Guiyang, China.
Zongjian TanDepartment of Reproductive Medicine, Guizhou Provincial People's Hospital, Guiyang, China.
Jun HeDepartment of Reproductive Medicine, Guizhou Provincial People's Hospital, Guiyang, China.
Tingting JinSchool of Medicine, Guizhou University, Guiyang, China.
Yuanyuan HanSchool of Medicine, Guizhou University, Guiyang, China.
Li HuSchool of Medicine, Guizhou University, Guiyang, China.
Jukun SongDepartment of Oral and Maxillofacial Surgery, Guizhou Provincial People's Hospital, Guiyang, China.
Shengwen HuangPrenatal Diagnosis Center, Guizhou Provincial People's Hospital, Guiyang, China.
Guizhou Provincial People's Hospital · CNGuizhou University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundIncreasing studies suggest that tumor immune infiltration is a relative factor of prognosis in ovarian cancer (OvCa). The present study explored the composition of tumor-infiltrating immune cells (TIICs) in OvCa using CIBERSORT algorithm and further assessed their values for prognosis and therapeutic strategies by molecular subtypes.

methodsPublicly available databases including The Cancer Genome Atlas (TCGA) and GTEx were searched. Ovarian tumor samples were available from TCGA, and normal ovarian samples were obtained from the GTEx dataset. The relative proportions of immune cell profiling in OvCa and normal samples were evaluated by CIBERSORT algorithm. Association between each immune cell subtype and survival was inferred by the fractions of 22 immune cell types. "CancerSubtypes" R-package was employed to identify the three types of molecular classification and analyze the functional enrichment in each subclass. Response to immunotherapy and anticancer drug targets was predicted via TIDE algorithm and GDSC dataset.

resultsSubstantial variation reflecting individual difference was identified between cancer and normal tissues in the immune infiltration profiles. T cells CD4 memory activated, macrophages M1 were associated with improved overall survival (OS) as evaluated by univariate Cox regression and multivariate Cox. Three subtypes were identified by ´CancerSubtypes' R-package and every sub-cluster possessed specific immune cell characterization. Meanwhile, Cluster II exhibited poor prognosis and sensitive response to immunotherapy.

conclusionsThe cellular component of immune infiltration shows remarkable variation in OvCa. Profiling of immune infiltration is useful in prediction of prognosis of OvCa. The results from profiling might be considered in therapeutic modulation.

Indexed as

ImmunophenotypingAntineoplastic Agents, ImmunologicalCarcinoma, Ovarian EpithelialCD4-Positive T-LymphocytesDatasets as TopicDrug Resistance, NeoplasmFeasibility StudiesFemaleHumansImmunologic MemoryKaplan-Meier EstimateLymphocyte ActivationLymphocytes, Tumor-InfiltratingMacrophagesMiddle AgedNeoplasm InvasivenessAntineoplastic Agents, ImmunologicalCIBERSORT algorithmImmunotherapyOvarian cancerPrognostic valueTumor-infiltrating immune cells

Identifiers

PMID33043974
PMCPMC7593540
OpenAlexW3091878617

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.