Evidence map›Paper›PMID 33043110›Full record

ArticleInformatics in medicine unlocked2020

Exploration of surface glycoprotein to design multi-epitope vaccine for the prevention of Covid-19.

Elijah Kolawole Oladipo, Ayodeji Folorunsho Ajayi, Olumuyiwa Elijah Ariyo, Samson Olugbenga Onile, Esther Moradeyo Jimah, Louis Odinakaose Ezediuno, Oluwadunsin Iyanuoluwa Adebayo, Emmanuel Tayo Adebayo, Aduragbemi Noah Odeyemi, Marvellous Oluwaseun Oyeleke and 16 more

Abstract read
In one paragraph

Article in Informatics in medicine unlocked, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
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  8. Article
  9. A fractal scaling analysis of the SARS-CoV-2 genome sequence.Biomedical signal processing and control · 2022
    Article
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  11. Review
  12. Article
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors.

Elijah Kolawole OladipoDepartment of Microbiology, Laboratory of Molecular Biology, Immunology and Bioinformatics, Adeleke University, Ede, Osun State, Nigeria.
Ayodeji Folorunsho AjayiReproduction and Bioinformatics Unit, Department of Medical Physiology, Ladoke Akintola University of Technology, Ogbomoso, Oyo State, Nigeria.
Olumuyiwa Elijah AriyoDepartment of Medicine, Infectious Diseases and Tropical Medicine Unit, Federal Teaching Hospital, Ido-Ekiti, Ekiti State, Nigeria.
Samson Olugbenga OnileBiotechnology Programme, Department of Biological Sciences, Elizade University, Nigeria.
Esther Moradeyo JimahDepartment of Medical Microbiology and Parasitology, University of Ilorin, Kwara State, Nigeria.
Louis Odinakaose EzediunoDepartment of Microbiology and Parasitology, University of Ilorin, Kwara State, Nigeria.
Oluwadunsin Iyanuoluwa AdebayoReproduction and Bioinformatics Unit, Department of Medical Physiology, Ladoke Akintola University of Technology, Ogbomoso, Oyo State, Nigeria.
Emmanuel Tayo AdebayoReproduction and Bioinformatics Unit, Department of Medical Physiology, Ladoke Akintola University of Technology, Ogbomoso, Oyo State, Nigeria.
Aduragbemi Noah OdeyemiReproduction and Bioinformatics Unit, Department of Medical Physiology, Ladoke Akintola University of Technology, Ogbomoso, Oyo State, Nigeria.
Marvellous Oluwaseun OyelekeReproduction and Bioinformatics Unit, Department of Medical Physiology, Ladoke Akintola University of Technology, Ogbomoso, Oyo State, Nigeria.
Moyosoluwa Precious OyewoleDepartment of Biochemistry, Ladoke Akintola University of Technology, Ogbomoso, Oyo State, Nigeria.
Ayomide Samuel OguntomiGenomics Unit, Helix Biogen Consult, Ogbomoso, Oyo state, Nigeria.
Olawumi Elizabeth AkindiyaMicrobiology Programme, Department of Biological Science, Olusegun Agagu University of Science and Technology, Okitipupa, Ondo State, Nigeria.
Bunmi Olayemi OlamoyegunGenomics Unit, Helix Biogen Consult, Ogbomoso, Oyo state, Nigeria.
Victoria Oyetayo AremuReproduction and Bioinformatics Unit, Department of Medical Physiology, Ladoke Akintola University of Technology, Ogbomoso, Oyo State, Nigeria.
Abiola O ArowosayeDepartment of Virology, University of Ibadan, Ibadan, Oyo State, Nigeria.
Dorcas Olubunmi AboderinDepartment of Medical Microbiology and Parasitology, University of Lagos, Lagos State, Nigeria.
Habibat Bolanle BelloDepartment of Microbiology, Kebbi State University, Aliero, Kebbi State, Nigeria.
Tosin Yetunde SenbadejoDepartment of Microbiology, Fountain University, Osogbo, Osun State, Nigeria.
Elukunbi Hilda AwoyeluDepartment of Natural Sciences, Precious Conerstone University, Ibadan, Oyo State, Nigeria.
Adio Abayomi OladipoDepartment of Haematology and Blood Grouping Serology, Obafemi Awolowo Teaching Hospital Complex, Ile-Ife Wesley Guild Hospital Wing, Osun State, Nigeria.
Bukola Bisola OladipoDepartment of Clinical Nursing, Bowen University Teaching Hospital, Ogbomoso, Oyo State, Nigeria.
Lydia Oluwatoyin AjayiDepartment of Biochemistry, Adeleke University, Ede, Osun State, Nigeria.
Olusola Nathaniel MajolagbeDepartment of Pure and Applied Biology, Ladoke Akintola University of Technology, Ogbomoso, Oyo State, Nigeria.
Olubukola Monisola OyawoyeDepartment of Microbiology, Laboratory of Molecular Biology, Immunology and Bioinformatics, Adeleke University, Ede, Osun State, Nigeria.
Julius Kola OlokeDepartment of Natural Sciences, Precious Conerstone University, Ibadan, Oyo State, Nigeria.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Stimulation and generation of T and B cell-mediated long-term immune response are essential for the curbing of a deadly virus such as SAR-CoV-2 (Severe Acute Respiratory Corona Virus 2). Immunoinformatics approach in vaccine design takes advantage of antigenic and non-allergenic epitopes present on the spike glycoprotein of SARS-CoV-2 to elicit immune responses. T cells and B cells epitopes were predicted, and the selected residues were subjected to allergenicity, antigenicity and toxicity screening which were linked by appropriate linkers to form a multi-epitope subunit vaccine. The physiochemical properties of the vaccine construct were analyzed, and the molecular weight, molecular formula, theoretical isoelectric point value, half-life, solubility score, instability index, aliphatic index and GRAVY were predicted. The vaccine structure was constructed, refined, validated, and disulfide engineered to get the best model. Molecular binding simulation and molecular dynamics simulation were carried out to predict the stability and binding affinity of the vaccine construct with TLRs. Codon acclimatization and

Indexed as

COVID-19ImmunitySARS-CoV-2Subunit vaccineTLRs

Identifiers

PMID33043110
PMCPMC7533051

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.