Evidence map›Paper›PMID 33042130›Full record

ArticleFrontiers in immunology2020

Whole Transcriptome Analysis Reveals Heterogeneity in B Cell Memory Populations in Patients With Juvenile Idiopathic Arthritis-Associated Uveitis.

Roos A W Wennink, Aridaman Pandit, Anne-Mieke J W Haasnoot, Sanne Hiddingh, Viera Kalinina Ayuso, Nico M Wulffraat, Bas J Vastert, Timothy R D J Radstake, Joke H de Boer, Jonas J W Kuiper

Open access · goldAbstract read
In one paragraph

Article in Frontiers in immunology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed, 1 pooled it
0.6field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 1 synthesis or guideline pooled it, 9 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Roos A W WenninkDepartment of Ophthalmology, University Medical Center Utrecht, Utrecht University, Utrecht, Netherlands.
Aridaman PanditLaboratory of Translational Immunology, University Medical Center Utrecht, Utrecht University, Utrecht, Netherlands.
Anne-Mieke J W HaasnootDepartment of Ophthalmology, University Medical Center Utrecht, Utrecht University, Utrecht, Netherlands.
Sanne HiddinghLaboratory of Translational Immunology, University Medical Center Utrecht, Utrecht University, Utrecht, Netherlands.
Viera Kalinina AyusoDepartment of Ophthalmology, University Medical Center Utrecht, Utrecht University, Utrecht, Netherlands.
Nico M WulffraatDepartment of Pediatric Rheumatology, University Medical Center Utrecht, Utrecht, Netherlands.
Bas J VastertDepartment of Pediatric Rheumatology, University Medical Center Utrecht, Utrecht, Netherlands.
Timothy R D J RadstakeLaboratory of Translational Immunology, University Medical Center Utrecht, Utrecht University, Utrecht, Netherlands.
Joke H de BoerDepartment of Ophthalmology, University Medical Center Utrecht, Utrecht University, Utrecht, Netherlands.
Jonas J W KuiperDepartment of Ophthalmology, University Medical Center Utrecht, Utrecht University, Utrecht, Netherlands.
University Medical Center Utrecht · NLUtrecht University · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Purpose: Patients with juvenile idiopathic arthritis (JIA) are prone to developing chronic anterior uveitis (JIA-U+). Although several risk factors for JIA-U+ have been identified, the underlying etiology is poorly understood. Histopathological studies demonstrate B cell infiltrates in eye tissues of patients with JIA-U+. Methods: We performed transcriptome profiling of peripheral blood CD19-positive B cells taken from 14 cases with JIA-U+, 13 JIA cases without uveitis (JIA-U-), and five healthy controls. Deconvolution-based estimation was used to determine the immune cell fractions for each sample. Results: Deconvolution results revealed that naive B cells made up on average 71% of the CD19-positive cell fractions analyzed. Differential expression analysis identified 614 differentially expressed genes (DEGs) between the groups at nominal significance and six genes at a false discovery rate of 5% (FDR < 0.05). Head-to-head comparison of all JIA-U- versus JIA-U+ revealed no DEGs in the CD19+ B cell pool (FDR < 0.05). However, principal component analysis based on a panel of key genes for B cell subsets revealed that JIA-U+ cases bifurcate into distinct clusters, characterized by markedly disparate expression for genes associated with specific memory B cell populations. CIBERSORT analysis of the overall transcriptome of the new uveitis cluster identified an increased proportion of memory B cells. Conclusion: These data show that JIA-U- and JIA-U+ have a globally similar transcriptome considering the global peripheral CD19-positive B cell pool. However, heterogeneity in B cell memory genes among cases with uveitis suggests a role for specific memory B cell subsets in the etiology of JIA-U+.

Indexed as

AdolescentAdultAntigens, CD19Arthritis, JuvenileB-LymphocytesB-Lymphocyte SubsetsCells, CulturedChildEyeFemaleHumansImmunologic MemoryMaleUveitisYoung AdultAntigens, CD19B celljuvenile idiopathic arthritisjuvenile idiopathic arthritis associated uveitismemory B cellRNA sequencing

Identifiers

PMID33042130
PMCPMC7527539
OpenAlexW3087640614

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.